Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02367 ATGACTATGGATGAAGTCGGTAGTAGCTCTGAGTGGAGCAAAGAACAAGATAAAGCATTTGAAAATGCCTTGGCAATTCATGCTGAGGATGCTTCGGACCGATGGGAGAAGATTGCAGCTGATGTACAAGGGAAAACCTTGGAAGAGATAAAACACCACTATGAGCTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTGCCTTTGCCATCTTATAATTCTTCTTCAGAGGGCTCAACTAGCCATGCTGGTGATGAAGGAGCTGGCAAGAAGGGAGGCCATTCTTGGAATTGTAACAACGAATCTAATCATGGAACTAAGGCTTCCAGATCTGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCTACGCAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCAATGAATAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGTGTGAACAATGGAGATGTTTCAGCACCTCAAGGACCAATTACTGGTCAAACAAATGGCTCAGCAGCAAATTCTGCCGGAAAATCAACCAAACCAGCCCCTCCAACCCCAACTGCTGCCCAAGGCGTAGGAATATATGCTGCTCCTACTATTGGACAACCTATTGGTGGACCCCTTGTATCTGCAGTTGGCACCCCAGTGAATCTTCCTCCCCCAGCACACATGGCATACAGTCTCGGAGCCACCGTTCCTGGGACAGTTGTTCCTGGGGCACCGATGAATTTGGGTCCTGTGCCATACCCCATGCCTCATACATCTGCTCATAGATGA 888 0.4617 MTMDEVGSSSEWSKEQDKAFENALAIHAEDASDRWEKIAADVQGKTLEEIKHHYELLVEDVNQIESGCVPLPSYNSSSEGSTSHAGDEGAGKKGGHSWNCNNESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSAANSAGKSTKPAPPTPTAAQGVGIYAAPTIGQPIGGPLVSAVGTPVNLPPPAHMAYSLGATVPGTVVPGAPMNLGPVPYPMPHTSAHR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02367 295 CDD SANT 11 58 IPR001005 -
Cca01g02367 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Cca01g02367 295 MobiDBLite consensus disorder prediction 186 222 - -
Cca01g02367 295 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Cca01g02367 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Cca01g02367 295 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Cca01g02367 295 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Cca01g02367 295 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Cca01g02367 295 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Cca01g02367 295 SMART sant 8 60 IPR001005 -
Cca01g02367 295 SMART sant 119 169 IPR001005 -
Cca01g02367 295 CDD SANT 122 167 IPR001005 -
Cca01g02367 295 MobiDBLite consensus disorder prediction 186 226 - -
Cca01g02367 295 MobiDBLite consensus disorder prediction 72 119 - -
Cca01g02367 295 Gene3D - 121 173 - -
Cca01g02367 295 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Cca01g02367 295 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Cca01g02367 295 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 283 - -
Cca01g02367 295 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Cca01g02367 295 PANTHER TRANSCRIPTION FACTOR KUA1 7 283 - -
Cca01g02367 295 Gene3D - 4 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02367 Cca-Chr1 52279846 52288813 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g02367 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02367 - - gmx:100820272 547.354