Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02361 ATGAATTGGATTCAGTCTCAAATCTGCCACAGTAGTTATGCTACTATCAACAACCCCACTATTATTTCCCCTTCATGTTGTTGTTGTTCCTCTTCTGCATCATTGCCTTACAATTCTGACTACAAGAAACAATTACCCCCTCCTCTAGCTTCTTCATCTGGCACCAGAATAACCCCTGCAATTGTTTTTATCTTTGTCATTTTAGCTGTTGTGTTTTTCATCTCTGGTGTCCTCCACCTGCTTGTTAGATTTCTCATAAGGCTCAGATCCTCTTCATCAATTTCTCAGTCCAATAGGTACCCTGACATGTCTGAATCTGATCCTTACCAGAGACAGTTACAGCAGCTATTCCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCCCTCCCACTTTTCCTCTACAAAGACATTATAGGGTTGAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGTCAATTCTCAGAACAAGACATGCTGAGGTTGCTGCCCCTATGCAACCATGCTTTCCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACCTGTCCTCTCTGCAGAGGGAGTCTTTATGAGCCAGGCTTTGCATTTGAAAACCCAGTTTATGACTTTGAGGGTGTGAGGGAAGAAGATGGGGTTTCAGGCAGTGTTGCTGGTGAGGCTAGCAAGCATGCAGAAAGCCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATggggagggggtggggagaggaggaggggagAGTAGTACAAGTAATTTGGATGTTAGGAGATGCTACTCAATGGGGTCCTTTCAGTATGTGGTTGATGATTCAGATTTGCAAGTGGCTTTATGTACCAATAGAGGTGATGGTGGAGGTGCCATTGGTGGCAGTATGAGACAATTAAAAGGGAGATTGGCCCATTGTGGAAATTCTTCCACTGATGGGGATGTTGAGGGGAAGAAAATCAACATTGCTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTTTCAAGTTCACAAGAAAACCATTTGGGTGGTTCTGCAGCTTTGCCATGGATGAATAGAGCTCAAGGTACATGA 1134 0.4224 MNWIQSQICHSSYATINNPTIISPSCCCCSSSASLPYNSDYKKQLPPPLASSSGTRITPAIVFIFVILAVVFFISGVLHLLVRFLIRLRSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPLFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYDFEGVREEDGVSGSVAGEASKHAESHIMSGKRVFSVRLGKFRSSNNGEGVGRGGGESSTSNLDVRRCYSMGSFQYVVDDSDLQVALCTNRGDGGGAIGGSMRQLKGRLAHCGNSSTDGDVEGKKINIARKGESFSVSKIWQWSRKDKVSSSQENHLGGSAALPWMNRAQGT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02361 377 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Cca01g02361 377 SMART ring_2 149 190 IPR001841 -
Cca01g02361 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 369 - -
Cca01g02361 377 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 369 - -
Cca01g02361 377 CDD RING-H2_PA-TM-RING 148 191 - -
Cca01g02361 377 SUPERFAMILY RING/U-box 128 197 - -
Cca01g02361 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 196 IPR013083 -
Cca01g02361 377 MobiDBLite consensus disorder prediction 353 377 - -
Cca01g02361 377 Pfam Ring finger domain 148 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02361 Cca-Chr1 52224272 52226862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02361 51 353 C3H Transcription Factor Family AT2G18650 39.883 5.09e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02361 - - gmx:100818135 583.563