Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02347 ATGGCGGACGAATCGGAGCACGCGCCGGCACCGGCGAGTGGCGAATCTCTGCTCAATAAGATCGCCGAGAAGCTCCACGGCCACGATTCTTCCTCCGATTCCGATTCAGATTCCGGCAAAAAGGACACGTCATCATCGATTAAGGACAAGGTATTCCGCCTCTTCGGGAGAGAGAAACCCGTTCACTCCATCCTCGGCGGCGGAAAACCTGCTGATGTGCTATTGTGGAGGAACAAGAAGATATCTGGTGGTGTACTTGGTGGAGCCACTGCTGTGTGGATCTTTTTTGAGTTGCTTGAGTACCACCTGCTTACTCTAGTCTGTCACATTTTGATTCTATTGCTTGCGGTTTTGTTTTTGTGGGCCAATGCTCATACCTTTATTCACAAGGCACCGCCACACATCCCACTTGTTCAGGTTCCTGAAGAACCATTTCGCCAAGTTACATCTGCATTGATAATTGAACTCAACCGCGGATTAGCTGCCTTGCGTGCAATTGGTTCCGGAAGAGATTTGAAGACATTCCTCATTGTCATTGTTGGAACGTGGATTCTATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGCTTTTGTATTGTTGCACACGGTTCCTGTGTTGTATGACAAGTATGAGGACAAGATAGACCCTCTAGCAGAGAAGGCGCTCATTGAGTTTAAAAAGCAGTATGCTGTGTTTGATGCAAAGGTGTTGAGTAAGATACCAAAAGGCCCCTTGAAAGGCAAGAAGATAGCTTAG 771 0.4734 MADESEHAPAPASGESLLNKIAEKLHGHDSSSDSDSDSGKKDTSSSIKDKVFRLFGREKPVHSILGGGKPADVLLWRNKKISGGVLGGATAVWIFFELLEYHLLTLVCHILILLLAVLFLWANAHTFIHKAPPHIPLVQVPEEPFRQVTSALIIELNRGLAALRAIGSGRDLKTFLIVIVGTWILSIVGSWCNFLTLFYIAFVLLHTVPVLYDKYEDKIDPLAEKALIEFKKQYAVFDAKVLSKIPKGPLKGKKIA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02347 256 ProSiteProfiles Reticulon domain profile. 70 256 IPR003388 -
Cca01g02347 256 PANTHER RETICULON 1 254 IPR045064 GO:0009617
Cca01g02347 256 MobiDBLite consensus disorder prediction 25 44 - -
Cca01g02347 256 Pfam Reticulon 71 226 IPR003388 -
Cca01g02347 256 PANTHER RETICULON-LIKE PROTEIN 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02347 Cca-Chr1 52056444 52058319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02347 - - gmx:100779788 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02347 01 52056444 52058319 Cca02g02203 02 42537127 42539045 ECH
Cca01g02347 01 52056444 52058319 Cca01g02347 01 52056444 52058319 ECH
Cca07g02007 07 47582004 47586979 Cca01g02347 01 52056444 52058319 PCT