Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02339 ATGGAAAGCCAACAAGACCCACCACAAAATTCTCCTCTCTTCCCTTTCACTCCCGAGTCAATGATGCAAAACCCTTTGGAACCTCAAGGCTTGCATGATGATGACATAGACTGGGTTAACCTTTTCTCTGGCCAAAACAACTTCCTTGGGGATGCAAAGGCAATCATGGAATGCACTtcttcatcttcatcatcatcatcatGTGCTTTGATGGCTGAAAAGAGTGATAAAGAGAAAGGAAAAGGAGGCAGATTGAAGAAGACAACACAACCTAggtttgcctttcagacgagaagtgcagatgatattctggatgatggctatcgttggaggaagtatggccagaaaactgtgaagaacagcatacatcccagaagctactaccggtgcacgcatcatacatgcaatgtgaagaaacaggtgcaaaggttatcgaaagacacaaccatcgtggtgaccacgtacgagggtattcacaatcacccATGTGAAAAGCTCATGGAAACCCTAACACCACTTCTCAAGCAAATGCAGTTTCTCTCTAGGTATAATTTCTGGTTTTTTCTGCACCGTCGTATGCGGGTGATGATCATTGACAAAAGGAGGTGA 609 0.266 MESQQDPPQNSPLFPFTPESMMQNPLEPQGLHDDDIDWVNLFSGQNNFLGDAKAIMECTSSSSSSSSCALMAEKSDKEKGKGGRLKKTTQPRFAFQTRSADDILDDGYRWRKYGQKTVKNSIHPRSYYRCTHHTCNVKKQVQRLSKDTTIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLSRYNFWFFLHRRMRVMIIDKRR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02339 202 MobiDBLite consensus disorder prediction 1 24 - -
Cca01g02339 202 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 28 179 - -
Cca01g02339 202 MobiDBLite consensus disorder prediction 1 30 - -
Cca01g02339 202 Pfam WRKY DNA -binding domain 105 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02339 202 MobiDBLite consensus disorder prediction 67 90 - -
Cca01g02339 202 SUPERFAMILY WRKY DNA-binding domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g02339 202 Gene3D WRKY domain 89 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g02339 202 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02339 202 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 179 IPR044810 GO:0003700
Cca01g02339 202 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02339 Cca-Chr1 52012511 52017404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02339 79 182 WRKY Transcription Factor Family AT1G64000 76.923 5.66e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g02339 WRKY 5.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02339 - - gmx:100810669 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02339 01 52012511 52017404 Cca01g02339 01 52012511 52017404 ECH
Cca07g01956 07 47016531 47017836 Cca01g02339 01 52012511 52017404 PCT