Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g02330 | ATGAGCATACCGGATTCATTTGGGGGGTGGGGGGTTATTGGCTATGCCACCCAAAAATCTGGAACTACTGTCACCTTTGTGATAATAGATGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCTCGTTGTGTACTTGAATCTTCTGATGGTGAGATTTATTACTTGTCTGCAGATCACAGGCTAGAAACAAATGAAGAGGAGTAA | 207 | 0.4251 | MSIPDSFGGWGVIGYATQKSGTTVTFVIIDGWVVTVASVGDSRCVLESSDGEIYYLSADHRLETNEEE | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g02330 | 68 | Gene3D | - | 9 | 68 | IPR036457 | - | |
| Cca01g02330 | 68 | PANTHER | ALPHABET, ISOFORM E-RELATED | 18 | 68 | - | - | |
| Cca01g02330 | 68 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 68 | IPR001932 | - | |
| Cca01g02330 | 68 | SUPERFAMILY | PP2C-like | 16 | 67 | IPR036457 | - | |
| Cca01g02330 | 68 | Pfam | Protein phosphatase 2C | 18 | 67 | IPR001932 | - | |
| Cca01g02330 | 68 | PANTHER | OS03G0395100 PROTEIN | 18 | 68 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g02330 | Cca-Chr1 | 51893932 | 51894597 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca01g02330 | 17 | 68 | PP2C-type Phosphatase Gene Family | AT1G47380 | 75.000 | 1.38e-22 | 86.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g02330 | - | - | gmx:100778367 | 102.834 |