Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02328 ATGGACCTCGATTGGGATCTCCACGCCGTTGTCAGAGGCTGcaccaccacttcctccgccaccacaaccaccaccaccactaccacctcctccTCTTTCTCTACTTTCCCAGCCGAACAACTTTTGTCCCTTTCAGATAACCCCTTTGAAGCAAGGACTTCCATAGAAGAGCTTCACCACCTTTGCAAGCCTTTCTTCCTCAAACCTCACCCTCACTCCTTCCAAACCTCTTCTCCACTCTCTTCCTTTTCTTACTCCTCCTCCACACCCAAATCACCTCACAAAAAACATGAACAAAAACACCCTCCGACTCACTCTCAACATGCCCCCACCCCAAGATCCAAAAGAAGGAAGAATCAGGTTAAGAAGGTTTGCGAGGTGGCGGCTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGGTATTACAGATGTAGCAGCTCAAAGGGGTGCTTAGCTAGGAAACAAGTGGAGAGGAACAGATCCGACCCAACAATGTTCATAGTGACATACACTGGTGAACACAACCACCCTGTCCCCACTCATAGAAACTCCCTTGCTGGCTCCACGCGACACAAACCTCAAACCGGAGAAACTGCCACAAAATCGGTTTCTCCAGCCACCTCAGAGGTGGCAAAATCAGAGAGCACAGAAGAAGACATGGAACATCTGATGAAAGATGACAAGGAACCAAATGAATTTGGCTTAACAGAAACGGTGGTAACAGATGATTTCTTTGAAGGGTTAGAGGAACTAACAGGGTCTGCCACTAATAGTGCTGCCACTGCCGCTGGTGGTAGCTGA 846 0.4504 MDLDWDLHAVVRGCTTTSSATTTTTTTTTSSSFSTFPAEQLLSLSDNPFEARTSIEELHHLCKPFFLKPHPHSFQTSSPLSSFSYSSSTPKSPHKKHEQKHPPTHSQHAPTPRSKRRKNQVKKVCEVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTGEHNHPVPTHRNSLAGSTRHKPQTGETATKSVSPATSEVAKSESTEEDMEHLMKDDKEPNEFGLTETVVTDDFFEGLEELTGSATNSAATAAGGS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02328 281 MobiDBLite consensus disorder prediction 227 248 - -
Cca01g02328 281 ProSiteProfiles WRKY domain profile. 128 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02328 281 SUPERFAMILY WRKY DNA-binding domain 130 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g02328 281 SMART WRKY_cls 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02328 281 MobiDBLite consensus disorder prediction 78 122 - -
Cca01g02328 281 Pfam WRKY DNA -binding domain 135 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02328 281 Gene3D WRKY domain 117 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g02328 281 MobiDBLite consensus disorder prediction 191 226 - -
Cca01g02328 281 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 281 - -
Cca01g02328 281 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 281 IPR044810 GO:0003700
Cca01g02328 281 MobiDBLite consensus disorder prediction 188 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02328 Cca-Chr1 51837452 51838739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02328 1 280 WRKY Transcription Factor Family AT4G01250 49.684 1.92e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g02328 WRKY 4.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02328 K13425 - gmx:100815829 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02328 01 51837452 51838739 Cca02g02209 02 42597522 42598771 ECH
Cca01g02328 01 51837452 51838739 Cca08g00739 08 13995048 13996432 ECH
Cca01g02328 01 51837452 51838739 Cca01g02328 01 51837452 51838739 ECH
Cca01g02328 01 51837452 51838739 Cca07g01953 07 46987144 46991966 ECH
Cca07g01953 07 46987144 46991966 Cca01g02328 01 51837452 51838739 PCT