Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02327 ATGGTGGACGGCGGAGAGTTCGCCGGCACCATTTGTTCGATCTGCTACGAGCCTCTCAACCCCGTTAGCGAGGACCTTCAATCCGTCTCCATCTGCGGCCACGTCTTCCATGAGCTCTGTCTGCAGCAATGGTTCGAGTACTGTTCTAGATCGAAGAAGCACACGTGTCCCGTTTGCAAGCAGAGTTGCAGAGCCAGCGACGCGTGCAGGCTTTATTTTCAGTCAGTGGGAGATGCGAACGATGGGGTGAAGCCTCAGAAGAGCGTTGAATTTGAGGAAGATGCTGGGGTTCTACGTAGGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTGATTCTGAGTTAGAACGGAAATCAAAGGAATTAGAAGGGCTTAAAGAGGAGCTTTATGCTTGCAAGGACCAGGCAAAGATAGAAAAAGCATTAAAGAATGAGGCTTTGAATCAAAAAGCATCCATACAATTCCAGCTTCATAAGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTGAAAGATACGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTCTGGGTAATGGGGCCAACAGTAAAGATACAATAGATACATTGAAAAGATCTCTCGTCATGAGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATATTCTGGGAAGAGGCGAGGCTCGTTATAGCAAAAAGCTTGAAAAGGCTAAAGAGAAGATCACTAAATTGAAGGCAAGGCTACTGGAATTGGAGACATTAGCTGAAGTAAAAGAAAATGAACTGATGTCTGTGAAACTTTCAAAGAAAACAAAGAGGTTAAAGAATCTTGAAAATAACATCAATTCTGATTCTGATGCATTGACAGCTTGTAAATTTTCATTAAAAGAGCAAAGCAAGCAAATTTCAACACCCAAATCTGGAATGGACCTGACTGCTAAAGACAACAGTAAATCTTTACAATCTTTGAAGACAGAGAACTCCAGTGGTGATAAAAATAAGACGGTGAATATTAGTAATGTAAGTAAAACTACCTTTTCTCTTGATAAAAGGAGAGATTATATCTCAATTGATGAAGATGATTCAGAAGGCACTAAAGCTTTACAAGGATGTTCAAATCTCAAGTACAAAGATCAAGACAGGGATGATATTGCTTTTAGCAAGCCTTCTCTAGTGAAGCCAGAGGCCCTGTCTGGCATACGGACCGAAACATTATTGCAAGGAAAATGTACTTTGGCCGAGTCTCCCAGAGTTGATATTGACATTGACATGGCTAATGTTTCAGCTGGTGCTATGAATGAAGATGTAACTTTTCAAACCAATGTTAAAGAACCCATGGTAAACATTCGAAAGGAGTCACCAATAGCACTTTCAAATTCAGTTCCAGGGAACATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACTGAACAGTGAATCATCATCTGCAAAACGTTCAAGTAATGGGGATTTAATAGCTGTTGGGGCTGATGGTAGAGGTGGCAAAATTAAAGTTTTAAGGACTCCTAGCCAAATCCTCTCGGGTGGTAAGGAAAATTCAGTAAGTTCAAAAAGGTTGAAGTTTGGAGCTAAAACAAGTAGTTTGCAATCTCAGGGGTGCTTGCAGATAGAGCATTTTTTTGGTAGAGTCACTCAGTAA 1755 0.4137 MVDGGEFAGTICSICYEPLNPVSEDLQSVSICGHVFHELCLQQWFEYCSRSKKHTCPVCKQSCRASDACRLYFQSVGDANDGVKPQKSVEFEEDAGVLRREVKRLEVKVSGLDSELERKSKELEGLKEELYACKDQAKIEKALKNEALNQKASIQFQLHKKSEELEKSTLECFRLKDTNMALAKELAALKLVSDLDIDEEEVLKLATLGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKLEKAKEKITKLKARLLELETLAEVKENELMSVKLSKKTKRLKNLENNINSDSDALTACKFSLKEQSKQISTPKSGMDLTAKDNSKSLQSLKTENSSGDKNKTVNISNVSKTTFSLDKRRDYISIDEDDSEGTKALQGCSNLKYKDQDRDDIAFSKPSLVKPEALSGIRTETLLQGKCTLAESPRVDIDIDMANVSAGAMNEDVTFQTNVKEPMVNIRKESPIALSNSVPGNICFSGGLLGPDGTHRYLGKWCKRGLNSESSSAKRSSNGDLIAVGADGRGGKIKVLRTPSQILSGGKENSVSSKRLKFGAKTSSLQSQGCLQIEHFFGRVTQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02327 584 Coils Coil 102 136 - -
Cca01g02327 584 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 583 - -
Cca01g02327 584 CDD RING-H2 12 60 - -
Cca01g02327 584 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 583 - -
Cca01g02327 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 177 IPR013083 -
Cca01g02327 584 SUPERFAMILY RING/U-box 10 64 - -
Cca01g02327 584 SMART ring_2 12 59 IPR001841 -
Cca01g02327 584 Coils Coil 246 306 - -
Cca01g02327 584 MobiDBLite consensus disorder prediction 319 355 - -
Cca01g02327 584 Pfam Ring finger domain 11 60 IPR001841 -
Cca01g02327 584 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Cca01g02327 584 SMART ringv_2 11 60 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02327 461 584 C3H Transcription Factor Family AT4G01270 44.094 3.36e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02327 K11985 - gmx:100812811 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02327 01 51818921 51823980 Cca01g02327 01 51818921 51823980 ECH