Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02318 ATGGTGTCGGTTAACCCTAACCCCGCCCAAGGCTTCTACTTCTTCGATCCTTCCAACATGGCCCTTCCCGGCGTCAACAATCTCccgccgccgcagcaccctccgccgcctcccgccggagcaccctccgccTGCCCCAACAAGAAGCTCCGCAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGGAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCATCCATACCCTCAAAAAGCTCCTAAAATCGCTGCTACTGCATCCCAACTTACAGGCTCATTGCAATCTCCATCTGCTTTCGTTGAACCTACATACATTTATAGCTCAGATTCCTCATCTGTGCTTGGAAACCCAGTTACTAGCATGCCTTTGTCATCTTGGAATTATAATGCTACACCACCACCAGTCAATGTGCCACAACCACAAGTGATTAGAGATGGAATGGGATTGACTGGAGCTGGACAAGCTGTTCCTCATAATTGTTGCTATAGCAGTAGTAATGAAAGCACCCCTCCAACTTGGCCAAGTAGCAAAACGATTAATCAGGGTGACCAGGGCAAGCCATTTAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCCTTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACATAAACTAAGACAGATGGACCCAATAAATGTGGAAACGGTATTATTGTTGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAAGCTGCTTTCATCATATGACACCGACTCTGAGAAGTCAAAGTTTGTTAATATTTGCAGCACAAATAAATCTGAGAGTGCCGTTCTCTCTGCTTAG 1002 0.4122 MVSVNPNPAQGFYFFDPSNMALPGVNNLPPPQHPPPPPAGAPSACPNKKLRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKIAATASQLTGSLQSPSAFVEPTYIYSSDSSSVLGNPVTSMPLSSWNYNATPPPVNVPQPQVIRDGMGLTGAGQAVPHNCCYSSSNESTPPTWPSSKTINQGDQGKPFKVMPDFAQVYSFLGSVFDPNSTNHLHKLRQMDPINVETVLLLMRNLSINLMSPEFEDHKKLLSSYDTDSEKSKFVNICSTNKSESAVLSA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02318 333 PANTHER MYB TRANSCRIPTION FACTOR 2 325 - -
Cca01g02318 333 MobiDBLite consensus disorder prediction 24 52 - -
Cca01g02318 333 MobiDBLite consensus disorder prediction 109 131 - -
Cca01g02318 333 MobiDBLite consensus disorder prediction 27 43 - -
Cca01g02318 333 ProSiteProfiles SANT domain profile. 58 111 IPR017884 -
Cca01g02318 333 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Cca01g02318 333 PANTHER SWI/SNF COMPLEX-RELATED 2 325 - -
Cca01g02318 333 SMART sant 59 107 IPR001005 -
Cca01g02318 333 Gene3D - 63 110 - -
Cca01g02318 333 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Cca01g02318 333 CDD SANT 62 105 IPR001005 -
Cca01g02318 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Cca01g02318 333 SUPERFAMILY Homeodomain-like 54 110 IPR009057 -
Cca01g02318 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02318 Cca-Chr1 51654932 51660845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g02318 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02318 - - gmx:778090 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02318 01 51654932 51660845 Cca01g02318 01 51654932 51660845 ECH
Cca01g02318 01 51654932 51660845 Cca07g01948 07 46861945 46866641 ECH
Cca07g01948 07 46861945 46866641 Cca01g02318 01 51654932 51660845 PCT