Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02316 ATGTCAATATACGACGCAGCGTTCGTCAACACAGAGCTATCCAAACGCACTTCCATCTTCGGCCTCCGCCTCTGGGtcctcatcgggatcctcgtcggatccctcatcgtcatcaccctcttcctcctctccctctgcctcacctcccgccgccgcaaccaccccctccgccgccgcgccgccaccCCTCTCGTCTCCAAGGAAATCCTCGAGATCGTCCACGTCCCCGCGCCGCCGGAGATCCGCGCCGTCGAGCCCCCCAAGGCGCCGCCGCCTCCCCCCGCCGCGGCTCTGTACTCCAGCGGAGAGAGCCGGGGCGCCGCCAGCGCCTGCGAAACGGCGTCGTCGATTGGGAGCGGGAGCGTGGGCCCCGAAGTGTCGCATCTCGGGTGGGGGAGGTGGTACACTCTCAGGGAACTCGAAGACGCCACGAATGGGTTGTGCGAAGAGAACGTCATTGGAGAAGGTGGATATGGTATCGTGTATCGTGGCTTGTTACCTGATGGTACCAAGGTTGCTGTTAAGAACCTTTTGAATAATAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCGATTGGTCGAGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATATTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATGTTGAAAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCTATGACATGGGATATCCGAATGAACGTTATATTGGGCACGGCAAAAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAAGTTGTCCACCGAGACGTGAAATCGAGCAACATACTGCTTGATCGTCAGTGGAACTCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTATGCTGAGCATAGTTATGTCACCACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTAACAGAGAAGAGTGATGTGTATAGTTTTGGGATACTTATCATGGAAATAATTACTGGAAGAAGCCCTGTTGACTATAGTAGACCACAAGGAGAGGTTAATTTAATAGATTGGTTGAAAACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTTTCTGAAAAGCCATCCTCAAAAGCTCTTAAACGGGCTCTGTTGGTTGCTCTTCGATGTGTTGACCCTGATGCCAAAAAAAGGCCTAAAATAGGACATGTGATCCACATGCTAGAGGCTGAGGACCTCTTATTCCGTGATGATCGAAGGATTGGGGGAGAATCTTCCCGTTCTCATCGTGATTATCAACTAGAGCATAGGGACTCAAGAGTAGATAGACGGCAGATAGGTGGAGAGATCACTGATCAAAGTCAAAGTGAAGATGATAGTAGTAGATATCACCATCAACCCACCAGATGGAGATAA 1446 0.453 MSIYDAAFVNTELSKRTSIFGLRLWVLIGILVGSLIVITLFLLSLCLTSRRRNHPLRRRAATPLVSKEILEIVHVPAPPEIRAVEPPKAPPPPPAAALYSSGESRGAASACETASSIGSGSVGPEVSHLGWGRWYTLRELEDATNGLCEENVIGEGGYGIVYRGLLPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVENGNLEQWLHGDVGPVSPMTWDIRMNVILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLYAEHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIDWLKTMVGNRKSEEVVDPKLSEKPSSKALKRALLVALRCVDPDAKKRPKIGHVIHMLEAEDLLFRDDRRIGGESSRSHRDYQLEHRDSRVDRRQIGGEITDQSQSEDDSSRYHHQPTRWR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02316 481 PANTHER OS01G0323000 PROTEIN 1 443 - -
Cca01g02316 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Cca01g02316 481 ProSitePatterns Protein kinases ATP-binding region signature. 153 175 IPR017441 GO:0005524
Cca01g02316 481 MobiDBLite consensus disorder prediction 435 457 - -
Cca01g02316 481 MobiDBLite consensus disorder prediction 465 481 - -
Cca01g02316 481 PANTHER BNACNNG08720D PROTEIN 1 443 - -
Cca01g02316 481 Gene3D Phosphorylase Kinase; domain 1 128 222 - -
Cca01g02316 481 MobiDBLite consensus disorder prediction 435 481 - -
Cca01g02316 481 SUPERFAMILY Protein kinase-like (PK-like) 125 419 IPR011009 -
Cca01g02316 481 ProSiteProfiles Protein kinase domain profile. 147 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02316 481 Gene3D Transferase(Phosphotransferase) domain 1 223 430 - -
Cca01g02316 481 SMART serkin_6 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02316 481 CDD STKc_IRAK 153 419 - -
Cca01g02316 481 Pfam Protein kinase domain 150 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02316 Cca-Chr1 51628296 51631435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02316 26 419 Trihelix Transcription Factor Family AT5G38560 41.076 6.02e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca01g02316 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02316 - - gmx:100777348 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03104 03 52543410 52546956 Cca01g02316 01 51628296 51631435 PCT
Cca07g01944 07 46810370 46814063 Cca01g02316 01 51628296 51631435 PCT