Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02313 ATGTCTTCTGTTGAGTCAGCTGAACACAACAACATCAGAGGGATACCAACTCATGGTGGACGCTACATTCAGTACAATATCTATGGTAACCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCTGTGGGGAGAGGTGCTTATGGTATTGTTTGTGCTGCTGTAAATGCGGAGACGGGCGAGGAAGTCGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTACGTGAAATTAAGCTTCTTCGGCACATGGACCATGCAAATATTATGTCCATTAAAGATATTATACGACCTCCACAGAAGGAAAACTTCAATGATGTATACATGGTTTCTGAGTTAATGGACACGGATCTGCATCAAATAATACGTTCCAATCAACCATTGACTGATGATCATTGTCGGTATTTTATGTATCAATTGTTACGAGGGCTCAAATATGTACATTCAGCAAATGTTTTGCACCGTGACTTAAAGCCTAGCAATTTGCTATTGAATGCCAATTGTGACCTTAAGATTGCAGACTTTGGTCTTGCTAGAACTACATCTGAAACTGATTTTATGACTGAGTATGTGGTCACTCGATGGTACCGAGCTCCCGAATTGCTTCTTAATTGTTCAGAATATACAGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGTGAAATCATAACAAGACAACCGCTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTGATCACAGAGCTGATAGGATCACCTGATGATGCCAGCCTTGGATTTCTACGAAGTGATAACGCTCGTAGATATGTAAATCAGCTTCCTCAATATCCAAAGCAAAACTTTTCTGCTAGATTTCCCAACATGTCTCCTGGTGCAGTTGATTTGCTAGAGAAGATGCTAATCTTTGATCCAAACAGGCGTATTACAGTTGATGAGGCGCTGTGCCACCCATACATGGCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACTAGACCTTTTAGTTTTGACTTTGAGCAACCTTCATTCACTGAAGAAGATATCAAGGAACTCATTTGGAGAGAATCTGTGAAGTTCAATCCTGATCCACCAGTCTACTGA 1122 0.4127 MSSVESAEHNNIRGIPTHGGRYIQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHANIMSIKDIIRPPQKENFNDVYMVSELMDTDLHQIIRSNQPLTDDHCRYFMYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIITRQPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYVNQLPQYPKQNFSARFPNMSPGAVDLLEKMLIFDPNRRITVDEALCHPYMAPLHDINEEPVCTRPFSFDFEQPSFTEEDIKELIWRESVKFNPDPPVY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02313 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cca01g02313 373 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cca01g02313 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 372 - -
Cca01g02313 373 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Cca01g02313 373 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02313 373 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Cca01g02313 373 Pfam Protein kinase domain 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02313 373 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Cca01g02313 373 SUPERFAMILY Protein kinase-like (PK-like) 42 332 IPR011009 -
Cca01g02313 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 372 - -
Cca01g02313 373 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02313 373 CDD STKc_TEY_MAPK 32 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02313 Cca-Chr1 51594910 51603374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02313 6 372 MAP Kinase Gene Family AT4G01370 85.286 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca01g02313 Pkinase 4.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02313 K20600 - gmx:100779469 747.658