Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02303 ATGGCTGCTGTTAGGTCTTATTATGTAAGGCGAATAGGAAGCACAATCAAGGTTTCTTTTAATATGGAATTAGTTCAACGCTACCACTATCACCATAGTATGTGTATTGCAAGGTTGCCAAGTGATTCGCTGAGTCATCCTTATTATAAAGCAGAATTGCAGTTTGCTAAGAATCAGTTTAGTAATTTGGCTTTTGAATCCCGTGGAAGTAGTCACCAATTTGGTACTAGGGCCAATGTCTCGTTTAATCCTAGATTCGCTAGCGATTGTTTTCGGAGTGCCCTTCCTTTTGCTTCCGCGAGCCACATGTTGAATCGCCGGATGTATTCATCGTCGGTGGGAGGCAAGGGAAGTAGAGATGGTGGCACGGAAGTTGCTGCTGGTTCTGGTGCCAGTGACATGAATACCACGGGTGATTCTGTTGTTGGCGGTGATTGGGTTGGGAGGATTAAAGATACTTGGCAGAGTGTGGTAGATGCAGCATCATATGCTGGACAAAAGGTTAAAGAAACTTCTGATGATCTCATTCCATATGCTCAGCAGTTGCTTGATTCACACCCATATCTTAACAATGTGGTTATTCCGGTTGGTGGTACTTTATCGGCTACTATAATAGCCTGGTTCTTGATGCCTAGGATTTTGAGGAAGTTTCACAAATATGCAATACAAGGTCCCGTTTCTCTATTGCCAGGAAGCATGTCTGGGGAGCCAGTTCCGTATGAGAAAAGCTTTTGGGGTGCTATGGAGGATCCAATGCGATATTTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTTGCTCCGACAACTATAACCTCACAACATGTTGCACCCTTTTGGAGGGGTGCGGTGATAGTATCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCTCGGACATTGTCCGGTCAAAGTTTACTTGGACTCGATAGGGAGAAATTGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATCCGTAATTGGTGTAAtggctttggctgaggcttgtggtgtggccgtgCAATCTATTGTGACTGTTGGTGGTATCGGAGGAGTGGCTACTGCTTTTGCTGCCAGGGACATTCTTGGCAATGTGTTCAGTGGTTTATCCATGCAGTTTTCGAAGCCCTTTTCAATTGGAGATACCATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCATTGCTGAGTTCGGAGAAGTTCCCAGTCATTGTGCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCACGTGCTGAATATCGTGCCATTATTACCAAAATTCCGTTGCAAACTGAGGATTTAAGTAAGATTCCCCTGATTTCAGATGATGTAAAAGGCATGCTCAGATCAAATGCGAAGGTTTTCTTAGGAAAAGATGTTCCATACTGTTTCTTATCCCGTATAGAAAGTTCCTATGCAGAATTGACTCTTGGATACAACCTCAAACAAATGCGCAAAGACGAACTATACTCTGCACAACAAGATATTCTCCTGCAGGCAGTTCACATCATTAAGAATCACGGGATTGCTCTTGGCAGCACATGGCAAGACATGTCTTCTAAATGA 1614 0.4182 MAAVRSYYVRRIGSTIKVSFNMELVQRYHYHHSMCIARLPSDSLSHPYYKAELQFAKNQFSNLAFESRGSSHQFGTRANVSFNPRFASDCFRSALPFASASHMLNRRMYSSSVGGKGSRDGGTEVAAGSGASDMNTTGDSVVGGDWVGRIKDTWQSVVDAASYAGQKVKETSDDLIPYAQQLLDSHPYLNNVVIPVGGTLSATIIAWFLMPRILRKFHKYAIQGPVSLLPGSMSGEPVPYEKSFWGAMEDPMRYLVTFMAFSQIGVMVAPTTITSQHVAPFWRGAVIVSFVWFLHRWKTNVFARTLSGQSLLGLDREKLLALDKISSIGLSVIGVMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQTEDLSKIPLISDDVKGMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKQMRKDELYSAQQDILLQAVHIIKNHGIALGSTWQDMSSK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02303 537 Pfam Mechanosensitive ion channel 324 526 IPR006685 GO:0016020|GO:0055085
Cca01g02303 537 MobiDBLite consensus disorder prediction 112 139 - -
Cca01g02303 537 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 104 533 - -
Cca01g02303 537 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 281 365 IPR011014 GO:0016020
Cca01g02303 537 Gene3D - 281 381 - -
Cca01g02303 537 Gene3D - 382 430 IPR023408 -
Cca01g02303 537 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 104 533 - -
Cca01g02303 537 SUPERFAMILY Sm-like ribonucleoproteins 366 431 IPR010920 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02303 81 533 Mechanosensitive Ion Channel Family AT4G00290 61.148 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02303 K22047 - gmx:100789047 913.679