Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02300 ATGAAAGTTGAAGTAGAAATCATGTCAAGAGAAGACATTAGGCCTTCTTATCCCACACCCGCTCACCTGAAAACCTTCAAGCTTTCTCTTTTGGATCACCTTATTCCATCACCATATGCGCCTATTATCCTATTCTACACCTCACCTAACAACACTGACCCAACTTATTACCTTTCTCAAGTCCCCAAGAAGTTAGAATTGCTGAAGCAATCTTTATCAGAGACACTACCACAATTCTACCCTCTAGGTGGCAAAATCAAAGAAAACTTGTCCATTGAGTGCAATGATGAAGGTGCTAATTTTGTGCAAGCCAAAGTGAAGTGCCCTCTTGATAAATTTCTAGTCCAACCTCAGCTGAACATACTACACAAGTTTCTTCCCATTGATGTTGCTTCTGAAGAACCAAATTCAGGAACCTATGTGACTAACATTCAAGTAAACATTTTTTCATGTGGGGGAATTGCTATTGGCGTGTGTATTTCTCATCGGATCGTAGATGGGGCTGCATTAAGCACCTTCCTGAAAGGGTGGACAGAGAGGGCCAAAGGATGCAACCAAAACCAATTAATCAAACCAAACTTCATAGCATCTTCTCTTTTCCCATCATCAAACAATCCATGGTTTAGAGACTTATCATTGTGCATGTGGGGTTCCTTGTTAAAACAAGGAAACTGGGTCACAAAGAGGTTTTTGTTTAGAAACTCAGATATAGCCACACTCAAGGGTCAAACACTAGGCATAGAAAACTCCACACGTTTGGAGATAGTTTCTGCTATGCTGTGGAAGTCCCTCATGGATGGCACGGTTTGGTGCACAAAGGGCTTCTTTGGTGACTCATTTGGTGAACCTGCGGAGGAGAATGGATGA 867 0.4187 MKVEVEIMSREDIRPSYPTPAHLKTFKLSLLDHLIPSPYAPIILFYTSPNNTDPTYYLSQVPKKLELLKQSLSETLPQFYPLGGKIKENLSIECNDEGANFVQAKVKCPLDKFLVQPQLNILHKFLPIDVASEEPNSGTYVTNIQVNIFSCGGIAIGVCISHRIVDGAALSTFLKGWTERAKGCNQNQLIKPNFIASSLFPSSNNPWFRDLSLCMWGSLLKQGNWVTKRFLFRNSDIATLKGQTLGIENSTRLEIVSAMLWKSLMDGTVWCTKGFFGDSFGEPAEENG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02300 288 PANTHER VINORINE SYNTHASE-LIKE 5 266 - -
Cca01g02300 288 Pfam Transferase family 4 264 - -
Cca01g02300 288 PANTHER F21J9.9 5 266 - -
Cca01g02300 288 Gene3D - 1 207 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02300 Cca-Chr1 51481666 51482532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02300 3 206 Monolignol Biosynthesis Gene Families AT5G48930 27.830 9.82e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02300 - - gmx:100305374 421.394