Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02296 atggaggaagtgatttcactcatgggcacaggtctaaatgatgttcgcttcataggaatatggggcatggggggaataggtaagtcaaccattgctagattagtatacgaagcaatcaaagaggaattcaaggttagttgctttcttgaaaacgttagggaggagtctaagacaaatggcttagttcatattcaaaaggaatttctttcttatcttaatgtaagaagcaatgatttttacaatttatatgatgggaaaaaaataatagctaactctttaagaaacaaaaaggttcttcttgttcttgatgatgtaagtgaattaagccaattggagaatttagctggaaagcaagaatggtttggtccaggaagcagagtaatgatcacaacccgagataagcacttgctaacgacacatggagtgcatgtaacttgtaaggcaaaaggcttagcccaaaatgaagcccttcggctcttttgtttgaaagcatttaaacaagatcaacctaaagaagagtatttgaatttgtgcaaagaagtggttgcatatgcaagaggccttccattagctcttgaagtattgggttcccatcttcatggaagaaccgttgaggtttggcatagtgctttagaacaaataagaagttttccgcaatccaaaatccaagatacactgaaaataagctatgacagtttacaacctacggagaaaaaaatgtttcttgatattgcctgttttttcaaagggatggacctagatgaagtgataaatatcttagaaaatagtggagatcatcccaaaattggaattgacattttgattgaaagatctttggtaactctggataagatgaagaataagttcgggatgcatgatttgctacaagaaatgggtaggaatattgtatttcaagaatctccaaatgatcctggcaaacgtagtagattgtggtctcaaaaagacattgattatgtattgacaaaaaacaagggaactgatgaaattcaaggcatagttctgaatttagttcaatcgtctgattatgaagcacgctggagcactggagccttctccaagataagccagctaaggttactcaagttatgtgatatgcaacttccccttggcctcaactgccttcctagtgcactaaaagttcttcattggaagggatgtcctttgaaaaccttaccacttaataatcaactagatgaacttgttgacctcaaattgcctcatagtagaatagaacaactttggcatgagacaaagtttctggaaatgctgaagtccatcattttgagcttttccaaaaacctaaagcaatccccggacattgttggggttccaaatcttgaatcattggttcttgaaggttgcacaagtttaactgaagttcatccgtcccttgtaaaccataagaaacttgttatggtgaatttaaaagattgcaaaaggctcaaaacttttccaagTAAAATGGAGATGAGTTCCTTGAAAGATTTAAATCTTTCTGGTTGCTCTGGATTTAAATATCTTCCAGAGTTTGGGGAAAGCATGGAACATTTGTCAATGCTTTCTTTAGAGGGGACTGCTATAACAAAACTACCCTCATCGTTGGGATGTCTAGTTGGCCTTAATCATTTGGATTTGGGGAAATGCAAGAATCTTGTTTGCCTTCCAGATACCATTCATAAATTAAAGTCCCTCATAGTTTTGAATGTTTTTGGCTGCTCAAAACTTAGTAGCTTGCCAGAGGTTTTAAAGGAAATCAAGTGTTTGGAGGAACTTTATGCAGGTGAAACTGCTATTAAAGATCTACCTTCATTTGTCTTTTATCTGGAAAGTCTCAAGAATATCTCATTTGCTGGGTGCAAAGGGCCAGTAGCTAACTCAGTAAATGGACTTTTTCTCCCCTTTAAGTGGCTGTTTGGGAATCAGCAAACTCCTACTGGATTTAGAATACCACCTTCAATAAAATCTATACTGAATCTACCGTCTTTGCGTAGAATAAATTTAAGTTACTGCAATCTATCTGAAGACTCAATCCCAGATGATTTTTGTCACTTATCTTCATTGCTCATTCTAAATCTTACTGGCAACAATTTTGTTAGCCTACCAAGTTGCATTTCCAAACTCTCAAAGCTTGAATTTCTTATCCTAAACTGCTGTGAAAAGCTTCAAAGGTTGCCAGAGCTTCCATCAAGCATGCGAGGGTTGGAGGCAAGCAATTGCTCTTCACTGGAAACTTCCAAATTCAATCCATCCAAGCCATGTAGTCTTTTTGCATCGCCTACAAAATGGAATTTACCGAGAGAAATTAGAGTCTTTATGGAGGTTTGTACCCTGGTTTTCCCCACTTTCTAA 2370 0.1439 MEEVISLMGTGLNDVRFIGIWGMGGIGKSTIARLVYEAIKEEFKVSCFLENVREESKTNGLVHIQKEFLSYLNVRSNDFYNLYDGKKIIANSLRNKKVLLVLDDVSELSQLENLAGKQEWFGPGSRVMITTRDKHLLTTHGVHVTCKAKGLAQNEALRLFCLKAFKQDQPKEEYLNLCKEVVAYARGLPLALEVLGSHLHGRTVEVWHSALEQIRSFPQSKIQDTLKISYDSLQPTEKKMFLDIACFFKGMDLDEVINILENSGDHPKIGIDILIERSLVTLDKMKNKFGMHDLLQEMGRNIVFQESPNDPGKRSRLWSQKDIDYVLTKNKGTDEIQGIVLNLVQSSDYEARWSTGAFSKISQLRLLKLCDMQLPLGLNCLPSALKVLHWKGCPLKTLPLNNQLDELVDLKLPHSRIEQLWHETKFLEMLKSIILSFSKNLKQSPDIVGVPNLESLVLEGCTSLTEVHPSLVNHKKLVMVNLKDCKRLKTFPSKMEMSSLKDLNLSGCSGFKYLPEFGESMEHLSMLSLEGTAITKLPSSLGCLVGLNHLDLGKCKNLVCLPDTIHKLKSLIVLNVFGCSKLSSLPEVLKEIKCLEELYAGETAIKDLPSFVFYLESLKNISFAGCKGPVANSVNGLFLPFKWLFGNQQTPTGFRIPPSIKSILNLPSLRRINLSYCNLSEDSIPDDFCHLSSLLILNLTGNNFVSLPSCISKLSKLEFLILNCCEKLQRLPELPSSMRGLEASNCSSLETSKFNPSKPCSLFASPTKWNLPREIRVFMEVCTLVFPTF 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02296 789 SUPERFAMILY L domain-like 656 749 - -
Cca01g02296 789 Gene3D - 1 144 IPR027417 -
Cca01g02296 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 244 IPR027417 -
Cca01g02296 789 Gene3D Ribonuclease Inhibitor 646 758 IPR032675 -
Cca01g02296 789 Gene3D Ribonuclease Inhibitor 339 637 IPR032675 -
Cca01g02296 789 Pfam Leucine Rich Repeat 407 425 IPR011713 -
Cca01g02296 789 Pfam NB-ARC domain 14 233 IPR002182 GO:0043531
Cca01g02296 789 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 524 751 - -
Cca01g02296 789 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 540 - -
Cca01g02296 789 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 524 751 IPR044974 GO:0006952
Cca01g02296 789 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 540 IPR044974 GO:0006952
Cca01g02296 789 PRINTS Disease resistance protein signature 17 32 - -
Cca01g02296 789 PRINTS Disease resistance protein signature 92 106 - -
Cca01g02296 789 PRINTS Disease resistance protein signature 495 511 - -
Cca01g02296 789 PRINTS Disease resistance protein signature 185 199 - -
Cca01g02296 789 Gene3D - 150 234 IPR042197 -
Cca01g02296 789 SUPERFAMILY L domain-like 304 627 - -
Cca01g02296 789 SMART LRR_typ_2 666 690 IPR003591 -
Cca01g02296 789 SMART LRR_typ_2 521 544 IPR003591 -
Cca01g02296 789 SMART LRR_typ_2 691 714 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02296 Cca-Chr1 51407318 51412101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02296 1 636 WRKY Transcription Factor Family AT4G12020 34.198 2.82e-95 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02296 - - gmx:100815486 1273.46