Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02295 ATGGGCTTTCCGGTGGGCTACGCGGAGGTCTTTTTCCCCAACCCCTTTATTCAAACGCTGGCCTTCCTCGGCTTCCTCCGAAACCTCGTATTCCTCCTCTTCGACACCCTCGGACTCTCCGACTTCCTCCAGACCGACGTcgcctggccggaccccgccgcccccgacgccgcgccgcgcccgccctccgcctccgcgcTGCTGATCCGCGAGCTGCTGCCGGTGGCGAGGTTCGGGGACTCCGAGGAGAGCGCGTGCGCGGTGTGTCTGTTGGAATTCTCCTCGGAGGAGGAGATTCGGTGCATGAGGAACTGCAAGCACATTTTCCACCGCGCCTGCGTGGACCGTTGGATCGATCACGATCACAAAACCTGCCCTCTCTGCCGCTCTCCCTTCGTGCCCGATGATATGCTCGATGATTACAATCAACGGCTCTGGGCCGCTTCTGGAGTCACCGAGTTTTACGCTGACTACACTTCCTCCTTCTGA 489 0.5112 MGFPVGYAEVFFPNPFIQTLAFLGFLRNLVFLLFDTLGLSDFLQTDVAWPDPAAPDAAPRPPSASALLIRELLPVARFGDSEESACAVCLLEFSSEEEIRCMRNCKHIFHRACVDRWIDHDHKTCPLCRSPFVPDDMLDDYNQRLWAASGVTEFYADYTSSF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02295 162 Pfam Ring finger domain 85 129 IPR001841 -
Cca01g02295 162 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Cca01g02295 162 PANTHER BRH1 RING FINGER PROTEIN 1 158 - -
Cca01g02295 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 134 IPR013083 -
Cca01g02295 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 158 - -
Cca01g02295 162 SUPERFAMILY RING/U-box 81 136 - -
Cca01g02295 162 SMART ring_2 86 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02295 Cca-Chr1 51369272 51370058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02295 1 161 C3H Transcription Factor Family AT1G63840 46.746 9.76e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02295 K16281 - gmx:100500261 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01933 07 46639751 46640745 Cca01g02295 01 51369272 51370058 PCT