Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02288 ATGACGACGTCTCCCTATCCTCCCCGCCGCCGATCCGACTCCCACCACCGGACCACGCCCACCAGACCACCCCTCTCTCCCAGCTACGCCTCCTCCGAGTTCAGCACCTCCTCCGCCGAGACCCGCCGCAACCCCGTCACTACTGCCGCCAGGTCCTTCGCCGGGATATTCTCCGCCTGCTTCGCCCCGCCGGAGACCGACACCTCCAAGACCCTCGGGGATTCCGAGGAGTTCAAGTCTTCATCCACTGTATCGAATTCTTCAAGAACTAGTAGTCAGAGAGGGCGTGGCTCAAATCGAGGTACCAGCATCAGTTCACTCAACTTAGTCCCGGAGAAAGAGCCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCCAAGTCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGAGCTGTCTACAAGGCCAAACTCCTCGATGGGACTGTTGTTGCAGTAAAGCGTGCTAAGAAGAGTGTGTATGAGAAACATTTGGGAGTGGAGTTCCAGAGTGAGATCCAAACACTATCACGGGTGGAACATTTGAACTTGGTCAAGTTCTTTGGCTATTTGGAGCAAGGGGATGAAAGGATTGTTGTTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAGCATTTGGATGGCATTCATGGAACCGTTCTGGACCTTGCTTCTCGTCTAGATATAGCAATTGATGTTTCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTatcattcatagagacataaaatcttcaaacattcttctgaccgaacatcttcgagctaaggtagcagactttggttttgctagacaagcccctgacagtgactctggcatgacacatgtttccactcaagtcaaaggaacagctggttacttggaccctgaatacctgaaaacttatcaactaactgaaaagagtgacgtgtattcatttggagttttgcttgttgaACTTGTCACAGGTAGACGCCCCATCGAACCAAAATTTGAACTCAAGGAGCGAATCACAGCAAAATGGGCTATGAAGAGGTTCATTGATGGAGATGCTATCTCGGTGTTGGACCCAAGACTAGATCAAACTGCTGCAAATTCTTTGGCACTGCAAAAGATTCTTGAGCTAGCCTTACAGTGTTTGGCTCCACGTAGACAAAGCAGACCTTCTATGAAGAGATGTGCCGAGATCCTTTGGGCCATCCGCAAGGATTTCAGAGAGCTAGCAGCTTCAAACCTTCGCTCATTTTCCACTACTTCCCAAAGGAGCACCTCAGTGAGAGAGTGA 1314 0.4148 MTTSPYPPRRRSDSHHRTTPTRPPLSPSYASSEFSTSSAETRRNPVTTAARSFAGIFSACFAPPETDTSKTLGDSEEFKSSSTVSNSSRTSSQRGRGSNRGTSISSLNLVPEKEPGIVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVAVKRAKKSVYEKHLGVEFQSEIQTLSRVEHLNLVKFFGYLEQGDERIVVVEYVPNGTLREHLDGIHGTVLDLASRLDIAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTEHLRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFIDGDAISVLDPRLDQTAANSLALQKILELALQCLAPRRQSRPSMKRCAEILWAIRKDFRELAASNLRSFSTTSQRSTSVRE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02288 437 Coils Coil 436 437 - -
Cca01g02288 437 Gene3D Transferase(Phosphotransferase) domain 1 210 431 - -
Cca01g02288 437 MobiDBLite consensus disorder prediction 19 46 - -
Cca01g02288 437 Gene3D Phosphorylase Kinase; domain 1 93 209 - -
Cca01g02288 437 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 2 9 426 - -
Cca01g02288 437 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Cca01g02288 437 Pfam Protein kinase domain 137 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02288 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cca01g02288 437 ProSiteProfiles Protein kinase domain profile. 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02288 437 MobiDBLite consensus disorder prediction 1 46 - -
Cca01g02288 437 SMART serkin_6 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02288 437 MobiDBLite consensus disorder prediction 66 108 - -
Cca01g02288 437 PANTHER RECEPTOR-LIKE PROTEIN 55 9 426 - -
Cca01g02288 437 SUPERFAMILY Protein kinase-like (PK-like) 107 410 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02288 Cca-Chr1 51263249 51267425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02288 120 400 Receptor kinase-like Gene Family AT1G79620 46.316 3.37e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Cca01g02288 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02288 - - gmx:100792034 688.723