Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02284 ATGCATAAAGTCTGGTGGCCTCTGATCCTTTCGCGATTCCAAATATTAGACGAGAATGAGCTTATCACTGGATGGTTTGATTATTTAACAGAAAAAGAGAGCTGGAAAATGGGAGGTTGTTGTTGTTCTGCTAGGAAACCTCACCTGCATGGAACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTGACATCTAATGACGGTGTGGCTGCTTCACTCACTACTGGATTGCTGGTAGGCTTGAACTTAGAAACTTCCACACCTGATACATATCAGCCGCCTCCTGCACCTCTGCCTTATGATGTGGTCTTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGCAGTAGCTTTGGAACATTAATTACATGTGAAGATCTTGAAGAAGCTCACTGTAAAGCTAAAGCTATTTCAGCACCTATATCTCCAAGCAAGGCAGAACTGTCAAAATCAACTGAATTTCATGCATTAGTGACGGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGCATTCTCGAGTGGATGGAAAGAAGTGATTCTTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACACTGGACTAG 684 0.4254 MHKVWWPLILSRFQILDENELITGWFDYLTEKESWKMGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGVAASLTTGLLVGLNLETSTPDTYQPPPAPLPYDVVLGGPASTDSESGRETVSGSSFGTLITCEDLEEAHCKAKAISAPISPSKAELSKSTEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02284 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 37 227 - -
Cca01g02284 227 SMART ring_2 176 216 IPR001841 -
Cca01g02284 227 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Cca01g02284 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 223 IPR013083 -
Cca01g02284 227 Pfam Ring finger domain 176 216 IPR001841 -
Cca01g02284 227 SUPERFAMILY RING/U-box 167 223 - -
Cca01g02284 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02284 Cca-Chr1 51232481 51236738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02284 37 227 C3H Transcription Factor Family AT4G00335 60.733 9.26e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02284 - - gmx:100804435 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01931 07 46588524 46593467 Cca01g02284 01 51232481 51236738 PCT