Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02282 ATGTTGGGGAAAAGGAAACATGTGAATTTGTATAAGCTATTTTTGGTTGTGAGAGGGAAAGGTGGATATGATACCATTTGTAGTTGGAGGTTGTGGGAACAAGTTGGGAAGGAACTTGGGTTGGGTGTGAGTGTTGGTGTCTTTGTTAAACTGGTTTACAGTAATTACTTAAGTGTTTTAGATGTATGGATGAAGAAGTTTCCTAAGAGCAAGGTAGCTCCCGAGTATGGTTTGGTGGATGATAATAAGCTTAGGAAGCATTTGATGGACTTGCAGACTAAGTTGTGTAGTGCTAATGGGATGAAAGGTTTCAATTTAGAAGGGAAAGGTTATGAAAATGGAGGATGTCCTGGTTCGAAGATGCTAGACCATGAGATGAATGAGTCGACTCTCAAAAAAATTGGTGAGGGAAATGATGCAATGGAAGTGGAGGAAGAGTTTGATGGAGGGAAAATGTTAGTAGAGGAGGTGATGGATGTATCAAATGGGTGA 492 0.4024 MLGKRKHVNLYKLFLVVRGKGGYDTICSWRLWEQVGKELGLGVSVGVFVKLVYSNYLSVLDVWMKKFPKSKVAPEYGLVDDNKLRKHLMDLQTKLCSANGMKGFNLEGKGYENGGCPGSKMLDHEMNESTLKKIGEGNDAMEVEEEFDGGKMLVEEVMDVSNG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02282 163 Pfam ARID/BRIGHT DNA binding domain 5 58 IPR001606 GO:0003677
Cca01g02282 163 Gene3D - 1 74 IPR036431 GO:0003677
Cca01g02282 163 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Cca01g02282 163 SUPERFAMILY ARID-like 5 66 IPR036431 GO:0003677
Cca01g02282 163 CDD ARID 5 57 - -
Cca01g02282 163 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 71 - -
Cca01g02282 163 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02282 Cca-Chr1 51212770 51213449 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca01g02282 ARID 4.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02282 - - gsj:114390964 155.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01928 07 46499863 46504477 Cca01g02282 01 51212770 51213449 PCT