Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02280 atgcaatccggtggcggaggcggcggccggaaccccggagtggggccggcggggcgggcggtggcaacgtcgtcggccgcggcgtcaccgacttcttcgtcttcggcgtcgcagttggggctggattctttgcagcagcagcagcagcaacaacaacaacaacaacagataggttctaggcagTCATTTCAACAACAACTGCTTAGAAAACCCGAAGGGAATGAAGCTTTTTTAGCTTACCAAGCAGGGCTTCAAGGGGTATTCGGGAGTAACAATTTCTCATCTCCTAGTGCCATGCAACTGCCTCAGCAGTCTCGAAAATTGCATCTTGGTTCCAACCAGGATACCCAGCTAAGGGGTCAAGGTATTGAGCAGCAAATGTTAAATCCTGTCCATCAAGCATACCTTCAATATGCACTCCAGGCTGCGCAACAAAAGCCGACTTTGGGAATTCAGTCACAACAGCAAACTAAAATGGGAATGATAAGCTCTGCATCTCTTAAGGATCAGGAAATGCGTATGGGAAATTTAAAAATGCAGGACATTATGTCTATGCAGGCAGCGAATCAAGCTCAAGGATCATCCTCAAGGAATTCATCTGAGCTTGTTGCTCGTGGAGACAAGCAAATGGAGCAAGGACAACAAATAGCACCTGATCAGAAGAGTGAAGGAAAGCCTTCAACCCAGGGACCAACCATTGGACATTTAATTCCTGGGAATATGATAAGACCCATGCAAGCACCCGAAACACAGCAGGGCATCCAAAATGTAAACAGCCAGATTGCAGTATCTGCTCAATTGCAGGCTATGCAGGCATGGGCACGTGAACGTAATATTGATTTATCACATCCTGCAAATGCACACTTAATGGCGCAGCTCATTCCACTGATGCAGTCAAGAATGGTCTCACAATCAAAGGTCAACGAGAGCAACATTGGTGTTCAGTCATCACCTGTCCCTGTTTCAAAGCAGCAGGTTACTTCTCCAGCAATTGCAAGTGAGAGCTCAGCACATGCCAACTCATCCAGTGACATGTCTGGGCAGTCAGGTTCTTCAAAAGCCAGACAGACAGTTCCACCCAGTCATCTTGGCTCAACAACAAATGCTGGTGTAGCTGGTAACTCGAGTGATGTGACACAGCAATTCAGTGTTCACAGCAGAGACTCTCAAGCTCCTCCAAGGCAACCAGCGTTAGTTGGTAATGGAATGCCCTCTATGCATTCTCAGCAATCTTCTGCCAATACGAACTTAGGTGCAGACCATCATTTGAATGCAAAAAGTTCATCATCTGGTCCAGAACCTCCTCAAATGCAGTACATCAGGCAGTTAAACCAATCTGCTTCTCAGGCTGGAGCTCCATCAAATGAAGGGGGTTCAGGAAATCATGCCAAATCTCAAGGGTCACCAGCACAGATGTCTCAGCAAAGAACCGCTTTTACAAAACAACAGCTACATGTTCTAAAAGCTCAGATACTAGCATTTAGGCGACTGAAGAAAGGAGAAGGTACTTTGCCTCAAGAACTTCTTCGTGCTATTGTTCCACCACCTCTTGAGGTGCAGGTGCAACAGCCAAATCATGTTGTTGGAGGACTAAACCAAGAAAAATCTGCTGGAAATGTTGTGGCAGAACAAGCAAGCCATGTGGAGTCCAATGCCAAGGAGTTGCAGTCTATCACTGCTATTAATGGTCAGAGTTCTTTAAAGCAGGAATCCTTTGCCAGAGAAGAGAAACCCATTATGCCCCCAGTTCATGTTCAAGCTGCTGTGTCAAAGGAATCTGCTCCAATGTTATCTTCTGGAAAGGAAGAGCATAAATCAATTGGATGCCCTGTTAAGTCAAACCAGGACAGCGAACGTGGAAATAACACTACTCCTGTTAGAAATGAGTTGGCATTAGATAGGGGAAAGTCTGTTGCAACACAGGTTCCTGTATCTGACCCAATGCAAATTAAGAAACCTGCACAAACAAGCACTGTTTCCCAGCCAAAGGATGTGGGATCAACCAGAAAATATCACGGACCTCTGTTTGATTTTTCTTTTTTTACTAGGAAGCATGACTCCTTTGGGTCATCAATGATGTTAAACAACAACAGTAATATGTCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCATGGAAGTACTTAACAAGAAAAGGACAGAAAATTTAAAAAAGATTGAAGGTTTATTGGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTGAGGCTACAAATTGAAGAGAAAAAGCTTCGCCTAGTAGATCTTCAGGCACGCTTAAGGGATGAGATTGATCAACAACAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTAGGCTTTGTGAACGTCAGCGCATGGAACTTGCTAGACAAGTGCAGGCATCTCAGAGAGCAGTAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCTCATTGGGCAATTCGTGATGCCCGTACTGCTCGCAACAGGGGGGTTGCCAAATATCATGAAAGGATGTTGCGGGAGTTCTCAAAACGTAAAGATGATGACAGAAACAAAAGGTTGGAAGCCTTAAAGAACAATGATGTTGACAGATATAGGGAGATGTTACTGGAGCAGCAGACTAGCATCCCTGGAGATGCTGCAGAGAGATATGCTGTTCTTTCAACTTTCTTAACCCAGACTGAAGAGTATCTACACAAATTAGGAAGTAAGATAACAGCTGCTAAAAATCAACAGGAAGTGGAGGAAGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTCTGGAGATGAATGCTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAATCTTGCCCATGCTGTGAATGAATCGGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCTTACTTGATGGAATTTAAAGGGAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTTTATAATTGGTTGCCATCTGTTTCATGCATTTTTTATGTTGGAAGCAAGGATCATCGGTCAAAATTATTTTCCCAAGAGGTTTGTGCTATGAAATTTAATGTCCTCGTGACTACTTACGAGTTCATCATGTATGACCGGTCAAAACTTTCAAAAATTGACTGGAAGTATATCATAATTGACGAAGCACAGAGAATGAAGGATAGAGATTCAGTTTTAGCGCGTGATCTTGATAGATATCGTTGTCAAAGACGACTGCTTTTGACAGGAACACCATTACAGAATGATTTGAAGGAACTCTGGTCTCTCTTAAATTTACTTCTTCCTGAAGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCCTCTCAAAATGTAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATTATTATCCATCGACTTCATCAGATACTTGAGCCATTCATGCTCAGGCGTCGTGTTGAAGATGTGGAAGGCTCGCTTCCACCGAAGGTCAGCATAGTCTTAAAATGTAAAATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTCAAATCAACAGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGAAAGCTTCATAAGAATCCATCATACCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAGACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAGTGACCTATCTAAGGATTTCATTGTAAGATCTTGTGGAAAACTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACATCGAGTTCTACTCTTCAGTACCATGACAAAACTTCTAGACATCTTGGAAGAATATCTACAGTGGCGAAGACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCTGCTATAGTGGACTTCAATAGCCCTGATTCAGACAGTTTCATCTTCCTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACGGTTGTCATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAAAGTTATATACATGGAAGCTGTTGTTGACAAAATTGCTAGTCATCAAAAGGAGGATGAACTGAGAAGTGGAGGCACTGTTGATCTGGAGGATGAACTTGCAGGTAAGGATCGCTACATGGGGTCCATTGAGAGCCTTATTAGGAACAATATTCAACAATATAAGATCGATATGGCTGATGAGGTTATTAATGCGGGACGGTTTGATCAAAGAACAACACATGAAGAGAGGCGTATGACTTTGGAGACATTATTACATGATGAAGAAAGATATCAAGAAACTGTTCATGATGTTCCCTCACTGCAGGAGGTAAATCGCATGATTGCCAGGAGTAAAGAGGAAATTGAACTGTTTGATCAAATGGATGATGAACTTGATTGGATTGAGGAGATGACACGATATGATCACGTGCCTAAGTGGCTTCGAGCCAATACAAGAGAAGTAAATGCTGCTATTGCTGCTCTATCAAAACGACCGTCAAAGAACACTTTGTTGGGTGGTAGTATTGGCATGGAATCTAGTGAATTTGGTTCTGAAAGAAAAAGGGGACGACCCAAGGGAAAAAAGCATCCTAATTACAAAGAGTTGGATGATGAAATTTTGGAATACTCTGAAGTAAGCTCTGATGAAAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGATGATGATGGGTATAGTGTGGCTGATGGAGCTCAGGCCATTGATAAAGATCAATTGGAAGATGGTCTGCTTTGTGATGCTAGATATGAATTTCCTCAATCTTTAGAAAGTGCTAGAAATAATCAGATGGTTGAAGAAGCTGGTTCCTCAGGATCATCCTCAGACAGTCAAAGATTGACACAGATAGTTTCACCATCAGTCTCCTCGCAGAAATTTGGTTCCCTCTCCGCATTAGATGCCCGGCCAAGCTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCGGTATCTGGTGATTCTCACATGGACCATCAACAGTCTGGAAGTTGGATACATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAACAGCCAAAGATTAAACGCAAACGCAGTCTTCGTGTTCGACCTCGTCATGCCACTGAAAGACCTGAAGAGAAATCTGGTAGTGAAATTGCATCATCTCATTTGGCAGTCCAAGCAGACCACAAATATCAAGCACAACTGAGGACTGACCCAGAATCCAAATCATTTGGTGACTCCAATGCCAGCAAGCATGAACAAAACACACCATCCTTAAAAAATAAGCGAACCTTACCTTCAAGGAGAGTGGCTAATGCATCCAAATTACATGGATCACCAAAGTCTAGTCGTTTGAATTCCATGTCTGCGCCTTCACAAGATGGTGGTGAACACTCCAGAGAAAGCTGGGAAGGGAAACCTATCAATTCAAGTGGATCTTCAGCTCATGGCACTAGGATGACTGAAATTATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATGAGATTGTACCTTTGTTAACGGATTTGTGGAAGAGGATTGAAAATTCTGGATACAGTGGTGGACCTGGAAACAGCCTGTTAGATCTACGAAAGATTGATCAGCGGATTGATAAATTTGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTATTTTTTGATATCTTGAAAATTGCGTTTCCTGACACCGACTTCCGGGATGCAAGAAGTGCACTTTCTTTCTCCAGTCAAGTTGCTGCCGCCAGTACAGTAACATCCCCAAGGCAGGCGGCTGTCGGCCAAAGCAAGAGGCACAGGCTGATAAATGAGATGGAAACCGATTCACACCCTTCACAGAGGTCACTGCAACGCGGATCAGCTTCTAGTGGTGAAAACACCAGAATTAAAGCTCATTTGCCACAGAGGGAATCAAGGACTGGAAGTGGTGGTGGCAGCAGCACCAAGGAGCAACTTCAGCAGGGTGATTTGCCACTGCGTGCTCATCCAGGTGAACTGGTTGTGTGCAAGAAGAGAAGAAATGAGAGGGATAAGTCTTTAGGGAAGCCTAAGACTGGTCCTGTTTCAGTTTCACCTTCTAGGATGAGAAGTCCAGGGCCAGGTTCAGTCTCCAAGGATGCTAGATTAACTCAACAGGGGGGTTCCCATTCACAAGGATGGGTTGGTCAGCCATCTCAACACTCAAATGGGTCACTTGGCTGGGCAAAACCTGTAAAGAGGCTAAGAACAGATTCTGGAAAGAGAAGACCAAGCCATGCATAG 6705 0.4169 MQSGGGGGGRNPGVGPAGRAVATSSAAASPTSSSSASQLGLDSLQQQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAGLQGVFGSNNFSSPSAMQLPQQSRKLHLGSNQDTQLRGQGIEQQMLNPVHQAYLQYALQAAQQKPTLGIQSQQQTKMGMISSASLKDQEMRMGNLKMQDIMSMQAANQAQGSSSRNSSELVARGDKQMEQGQQIAPDQKSEGKPSTQGPTIGHLIPGNMIRPMQAPETQQGIQNVNSQIAVSAQLQAMQAWARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESNIGVQSSPVPVSKQQVTSPAIASESSAHANSSSDMSGQSGSSKARQTVPPSHLGSTTNAGVAGNSSDVTQQFSVHSRDSQAPPRQPALVGNGMPSMHSQQSSANTNLGADHHLNAKSSSSGPEPPQMQYIRQLNQSASQAGAPSNEGGSGNHAKSQGSPAQMSQQRTAFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPPLEVQVQQPNHVVGGLNQEKSAGNVVAEQASHVESNAKELQSITAINGQSSLKQESFAREEKPIMPPVHVQAAVSKESAPMLSSGKEEHKSIGCPVKSNQDSERGNNTTPVRNELALDRGKSVATQVPVSDPMQIKKPAQTSTVSQPKDVGSTRKYHGPLFDFSFFTRKHDSFGSSMMLNNNSNMSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNESVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPSQNVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHKNPSYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFIVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDSFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIASHQKEDELRSGGTVDLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYDHVPKWLRANTREVNAAIAALSKRPSKNTLLGGSIGMESSEFGSERKRGRPKGKKHPNYKELDDEILEYSEVSSDERNGYAHEEGEIGEFDDDGYSVADGAQAIDKDQLEDGLLCDARYEFPQSLESARNNQMVEEAGSSGSSSDSQRLTQIVSPSVSSQKFGSLSALDARPSSISKRMTDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSLRVRPRHATERPEEKSGSEIASSHLAVQADHKYQAQLRTDPESKSFGDSNASKHEQNTPSLKNKRTLPSRRVANASKLHGSPKSSRLNSMSAPSQDGGEHSRESWEGKPINSSGSSAHGTRMTEIIQRRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGYSGGPGNSLLDLRKIDQRIDKFEYNGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFSSQVAAASTVTSPRQAAVGQSKRHRLINEMETDSHPSQRSLQRGSASSGENTRIKAHLPQRESRTGSGGGSSTKEQLQQGDLPLRAHPGELVVCKKRRNERDKSLGKPKTGPVSVSPSRMRSPGPGSVSKDARLTQQGGSHSQGWVGQPSQHSNGSLGWAKPVKRLRTDSGKRRPSHA 2234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02280 2234 Coils Coil 1549 1569 - -
Cca01g02280 2234 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1333 1510 IPR001650 -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 186 205 - -
Cca01g02280 2234 Gene3D - 1928 2040 IPR036427 GO:0005515
Cca01g02280 2234 MobiDBLite consensus disorder prediction 2146 2163 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1715 1751 - -
Cca01g02280 2234 CDD Bromodomain 1935 2038 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1782 1803 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 24 66 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 2085 2234 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 307 478 - -
Cca01g02280 2234 Pfam SNF2-related domain 1005 1309 IPR000330 GO:0005524|GO:0140658
Cca01g02280 2234 PANTHER SNF2/RAD54 HELICASE FAMILY 36 2160 - -
Cca01g02280 2234 CDD SF2_C_SNF 1328 1453 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1887 1907 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1612 1647 - -
Cca01g02280 2234 SMART QLQ_2 477 514 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca01g02280 2234 MobiDBLite consensus disorder prediction 2120 2135 - -
Cca01g02280 2234 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1014 1179 IPR014001 -
Cca01g02280 2234 SMART bromo_6 1928 2043 IPR001487 GO:0005515
Cca01g02280 2234 MobiDBLite consensus disorder prediction 186 240 - -
Cca01g02280 2234 Pfam Helicase conserved C-terminal domain 1332 1443 IPR001650 -
Cca01g02280 2234 Coils Coil 752 776 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1 66 - -
Cca01g02280 2234 ProSiteProfiles QLQ domain profile. 478 514 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca01g02280 2234 SUPERFAMILY Bromodomain 1930 2041 IPR036427 GO:0005515
Cca01g02280 2234 MobiDBLite consensus disorder prediction 213 229 - -
Cca01g02280 2234 Gene3D - 993 1241 IPR038718 -
Cca01g02280 2234 Pfam QLQ 478 512 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca01g02280 2234 SMART ultradead3 998 1187 IPR014001 -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 307 390 - -
Cca01g02280 2234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1236 1574 IPR027417 -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1848 1879 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 594 623 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 2089 2110 - -
Cca01g02280 2234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1232 IPR027417 -
Cca01g02280 2234 Gene3D - 1242 1452 IPR027417 -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 402 478 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 2171 2213 - -
Cca01g02280 2234 PANTHER ATP-DEPENDENT HELICASE BRM 36 2160 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Cca01g02280 2234 SMART helicmild6 1359 1443 IPR001650 -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1916 1930 - -
Cca01g02280 2234 MobiDBLite consensus disorder prediction 1770 1930 - -
Cca01g02280 2234 Gene3D - 804 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02280 Cca-Chr1 51177848 51191915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02280 1023 1468 RAD5 or RAD16-like Gene Family AT1G02670 26.306 8.92e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca01g02280 SNF2_N 4.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02280 - - gmx:100807104 3841.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02280 01 51177848 51191915 Cca01g02280 01 51177848 51191915 ECH
Cca07g01925 07 46426414 46440827 Cca01g02280 01 51177848 51191915 PCT