Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02274 ATGGCTGTGGCGAGTCTGAGTCCTATGCCTGCAACTCCACCACGAGTCAATTCTGTGAACTCACTTCGTGATATTGGGGTTCCTGGGATCATGACCAGTAGGAGAGAAATTTTAAATGAGCCAAGTCCGAGTATGGTTAATGACACAATCTACGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAATTAAATCTGATATGGGCAATACAGAACTCTGGAGGAAAGAGAGTTTGCATTCTTCATGTTCACGTGCCAGCGCCTATGATCCCCTTGACCTTGATGGGTGCTAAATTTCGTGCAAGTGCACTGGAAGAACAGGAAGTTCAAGCTTACCACGAAAATCAGAGGCAAGACATGCACAAGACAATGGATGCCTATCTTTCTATCTGTCAAAGGATGGGGGTGCGGGCAGGGAAACTATACATTGAAAAGGATTGCATTGAAAAAGGAATTGTAGAACTCATCTCCCAGTATGGCATACAGAAACTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGACTGCCCTCAGGTCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCTTGTCATATACTGTTTATCTGCAAGGGGTTCCTTATACACACAAGGGATAGCAATTTGGATAGAGGGAATGTAGAAGCTGTATCTCCTTTGGTGCAGAAAAAGGCAAACTCTGAAGATGGGCATTCACCTCATTCGAGATCTCAATCTGTTGTGCTAAATCATTGGATAAAACTAACTAATCCAGCTCAAGAGTTGTTTCGTAGAGCAAGGACTGTCAACAATGGACATGGGAGGAGCTATGCATCTGTTTCTTCTTCAGAAGGGTTTTTAACTCCTCAGAGTCCTTCAGTTGTCTCAGTGTGTTCTGACTCAGTTGAACCAGGATTGACCCCAAATTTGATTAGTGGTGGCAGTGAAAATGTATTAGACTTGAATTTGAATGGCCTTTCTCAGACTAATCAGAATCTTCATCATTCATCACCTCCTAGTGTTCTGGATGGAGGAATGGATGATGCTGTCTACGATCAAATTGAACAGGCAATGGCTGAGGCTGCGAATGCTAGGAGGGATGCATATCAAGAAACTGTTAGGCGTGGGAAAGCTGAAAAAGATGCCATTGATGCTATTCGCAGGGCTAAAGCCGCTGAAAACTTGTATAAAGAAGAGCTGGAACTGAGGAAAGAACTAGAGGAAGAAGCAAAGAAAGCAAATGAAGAACTTGATAATATGAAGAGATGGACAGACAAAGTTAATGAAGAACTCCAACTTGCCTTAGATCAGAAATCATCGCTAGAAAATCAAATTGCATCAACTGATCTTATGATCAAGGAGTTGGAGCAGAAGATTACATCTGCTGAGAACATGTTACAAAGCTACAAGGATGAACTAGATGATATGCAAATGCAGCGTGATAATGCATTGGGAGAGGCTGAGGAGTTAAGGAGAAAACAAGGGGAGGCCTCAACCGCACATGAGCTCCAACGCTTCTCAGAATTTTCCTTTGCAGAGATTAAAGAAGCAACAAGTAACTTCCATCCATCCCTCAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCTTGCATCACACCGAGGTGGCTATAAAAATGTTGAATCCTGACAGCACACAAGGACCTTTGGAGTTTCAGCAGGCGGTTGAAGTATTGAGCAAGTTAAGGCATCCCAATCTCATCACACTTATAGGAGCCTGTCCAGAATCTTGGACTcttgtctatgagtatttacccagtggaagccttgaagatcgtctaaactgtaaggataacacacctccattatcatggcaaactcgagttcgcattgctgcagaactctgttctgctctcatttttcttcactccaataaacctcacagcatagcgcatggtgacttaaaacccgccaacattctccttgatgcaaaccttgttagcaagctcagcgactttggaatctctagaatattatcttgtcaagagagttctagtaacaacactacacagttctggagaactgttccaaagggaacttttgtgtatgtggatcctgaattccttgcatgtggtgaacttacaccaaagtcggatgtttattcatttggaatcgttctattgagatTGGTGACTGGGAAACCAGCCCTGGGAATAACAAAGGAAGTGAAATATGCATTAGATTCTGGAAAGTTGAAGTTCCTTTTGGATCCTTTGGCTGGAAACTGGCCACTTGTGCTAGCTGAAGAGTTGGTTCGCTTGGCTTTGAGGTGTTGTGGGATGAATCGAAAGAACCGACCAAATCTTTATCCAGATGTTTGGAGGGTACTGGAACCAATGAGGGCTTCTTCTGGAGACACAAACACCTTTGAATTGGGTTCTCAAGGGCTATGCCAACCTCCTCCATATTTTATTTGTCCAATATTTCTGGAAGTGATGCAGGATCCACATGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGCAATACGTGCATGGCTGGAAAGTGGTCATGAGACTTCACCAAGGACAAATTCTAGGCTTTCACATCGCAATCTTGTTCCAAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAAAGTCACTGATCTAA 2640 0.367 MAVASLSPMPATPPRVNSVNSLRDIGVPGIMTSRREILNEPSPSMVNDTIYVAVAKDVKDSKLNLIWAIQNSGGKRVCILHVHVPAPMIPLTLMGAKFRASALEEQEVQAYHENQRQDMHKTMDAYLSICQRMGVRAGKLYIEKDCIEKGIVELISQYGIQKLVMGAASDKYHSRRMTALRSKKAIYVCEQAPASCHILFICKGFLIHTRDSNLDRGNVEAVSPLVQKKANSEDGHSPHSRSQSVVLNHWIKLTNPAQELFRRARTVNNGHGRSYASVSSSEGFLTPQSPSVVSVCSDSVEPGLTPNLISGGSENVLDLNLNGLSQTNQNLHHSSPPSVLDGGMDDAVYDQIEQAMAEAANARRDAYQETVRRGKAEKDAIDAIRRAKAAENLYKEELELRKELEEEAKKANEELDNMKRWTDKVNEELQLALDQKSSLENQIASTDLMIKELEQKITSAENMLQSYKDELDDMQMQRDNALGEAEELRRKQGEASTAHELQRFSEFSFAEIKEATSNFHPSLKIGEGGYGSIFKGILHHTEVAIKMLNPDSTQGPLEFQQAVEVLSKLRHPNLITLIGACPESWTLVYEYLPSGSLEDRLNCKDNTPPLSWQTRVRIAAELCSALIFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGISRILSCQESSSNNTTQFWRTVPKGTFVYVDPEFLACGELTPKSDVYSFGIVLLRLVTGKPALGITKEVKYALDSGKLKFLLDPLAGNWPLVLAEELVRLALRCCGMNRKNRPNLYPDVWRVLEPMRASSGDTNTFELGSQGLCQPPPYFICPIFLEVMQDPHVAADGFTYEAEAIRAWLESGHETSPRTNSRLSHRNLVPNHSLRHAIQDWLQKSLI 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02274 879 ProSiteProfiles Protein kinase domain profile. 519 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02274 879 SUPERFAMILY RING/U-box 803 876 - -
Cca01g02274 879 ProSiteProfiles U-box domain profile. 806 879 IPR003613 GO:0004842|GO:0016567
Cca01g02274 879 PANTHER OS02G0152300 PROTEIN 16 876 - -
Cca01g02274 879 Pfam Protein kinase domain 522 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02274 879 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02274 879 ProSitePatterns Protein kinases ATP-binding region signature. 525 546 IPR017441 GO:0005524
Cca01g02274 879 Gene3D Transferase(Phosphotransferase) domain 1 592 799 - -
Cca01g02274 879 SUPERFAMILY Protein kinase-like (PK-like) 501 776 IPR011009 -
Cca01g02274 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 878 IPR013083 -
Cca01g02274 879 CDD STK_N 49 204 - -
Cca01g02274 879 Gene3D Phosphorylase Kinase; domain 1 489 591 - -
Cca01g02274 879 Pfam U-box domain 808 876 IPR003613 GO:0004842|GO:0016567
Cca01g02274 879 SMART Ubox_2 810 873 IPR003613 GO:0004842|GO:0016567
Cca01g02274 879 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 66 177 - -
Cca01g02274 879 Coils Coil 349 377 - -
Cca01g02274 879 CDD RING-Ubox_WDSUB1_like 811 852 - -
Cca01g02274 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Cca01g02274 879 Coils Coil 387 491 - -
Cca01g02274 879 PANTHER U-BOX KINASE FAMILY PROTEIN 16 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02274 Cca-Chr1 51073371 51080942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02274 3 878 U-box Gene Family AT2G45910 53.167 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca01g02274 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02274 - - gmx:100781596 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02274 01 51073371 51080942 Cca01g02274 01 51073371 51080942 ECH
Cca01g02274 01 51073371 51080942 Cca07g01915 07 46258092 46264857 ECH