Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02271 ATGGCAAAGAAGTCCCAAAGACGCTCTGTGCGGTATGAGAAAGATAAATCAGGCTGCATGTGGGGTTTTATTAGTATGTTTGATTTTCGCAACGGTCACTCCACTAGGAAGATGATTGCAGATAAGAGGCGAAGCAGCAAGCATGCTGTTGGTGTTGCACATTCTAAGAACAAGTTTGAGATGTTGAGCAATTTGGATGAAGTTTGTCAAGGAAGTTCTGACAGTGGAGAGAGTAGAAGACACACAGTTGGAACTGCTGCTAATAAGCCTAGTGTGAAGAAACTCATCGAAGAAGAGATGTTCATTGACCAGAATGCCATGAAGGATACATATAGTGCTCAAATGGAATCAAAGGAATCTACATTAAGGCGTGAAGTCCTTTTGAAGTTAGATTCCAAAAGAAAAAAGAAATCTTACAAGAAAAACTGTGATAAGGATACCAAAGATTTAAATTTGGATGCAACCTTGAAATCTGAAGTCACACATAATCAGCACTCGAGGAAGCAATCTAAAGATAATCTTGATCTGGATAAAATGATTGAAGAGTTTTGTCATCTAAGAGATGCTTGTTCCATGATGCATGGCAATGATGGAGAAGAAGTTGGTGCACAATCAAACCAGAAGCAAGCTATTTCTGAAAGTTCAAGAGTTGCAATTCGTGAATTTGTGAATCAGATGATAATAAATGGCAAAGATCCAGCCGAAGCCAGAAAATTCCTTTGCTCCCATCAACTTATCGAAGCTATCCAACTTATAAGTTCAGATAAGGAATTGTTTCTTTCACTTCTACAACACCCAAATTCTCTTTTATTGAAATGTGTTCAAGAGTTTAGGAATTCCCAGGGAACAAATGAAAATGATTATGGTTGTGTCACTGGTTCCATCTTCTCTGAAAAAGATCATGGCAACATGGAACATAATAGGGAGACTGTCAGCCACAAGAAGCATAACTTTTTCAGAAAAAAGATCAAGTCTCAGTCAAAAGGTTCAGAAAATGAAGATGGGGATACTAATTTGTCAAGTAGAATTGTTATTCTGAAGCCTGGGCAGATGAGCTTGCAAAATTCAGAAACTGGAAACAACCTAAGCTCATCCCAAGATTCTCATGATGCTGTCAGATACAATGGCCCTTCTGTGAGAGTTAGTTCACATTTTTCCCTTACAGAGATAAAAAATAAATTAAAGCATGCTATGGGAAGGGAGAGACATGGAAACCCTGAAGGGATCTCAAAGAGACACCCTGCTGCTGAATGTCAAAATAATAGGCCTAGCAGCAAAGCCATTGGTAAAGACAATGTTGGAATGAGATCTCCCAACAAAGATCACTTCTTCATTGAAAAAATTGCAAGACCTACCACTGGTGTTATGAAAGGAGACAAGACTGGTACAACTAAAGATTCTGAATTGATTGTGGAACACGAAAATGGTACTTATCCAAAACAAAGGATTTCTAACTTGTATATTGAGGCTAAGAAACATCTTTGTGAGATTGTAGGTAATGGAGATGAGAAAATAGACTTGTCAAGTAGGCAGATTTCCAGAACCCTTGGGAAAATACTATCTCTTCCTGAGTATAGCTTTTCTCCCCTTGGCAGCCCTGGAAGGGATTGGGAGCATCATTTTGTGACAGCACAAAAAAGATTTTCCAGTTCAGATAAAATTTGGGAAGATGATAAGGATAACGTGTCTTCCAAACAAGGAACTTTTGTTGGTGATTTGGATCAGGAAATGGACCATTCAGAGAAGCATTCAAGCATTTGTGATGAAAGCTCTAATAATAAAGTACAAGAAATTAAATCAGACACCAATTTCTCTGACAATGTTGATAAAGCAGAAAATATTTGTCCTATTGGCGATGAGATAGTTACCGAAGATGATATAGAATCTGCAAAAGAGGTGAATGTCTTAGAATCTACCTCAGAACCAGTTGGTGTCAGTGCAGGAAAGGAGGACCAAAACTATGATGTCTCAGACATTTCTGATTGTGAAAAATGTTCTCAATGTTCAAAGCAGGCTGTAAAAGAAGAAAGCAAGCCAACATCTCCACTGTCATCCCCCTCTCATTCTTCCACCACTAAGAAAATTGAAGAGCTAGAAAGTGCTACAGAGGTGTCTGGGCGACCAAGTCCCGTATCTGTTCTTGACACACCATTCTTAGAGGATGATGTCAACCCTGACTACTCCAGATTTCAACCTGTTGAAGTACCAGCACGTCCACTGCAATTCGAAGAACAATATTCTGCACCTTTGAATCAAATCAACAGAGAAAAACATTGTCTTCAAGAAAATGAATTGATATATGATTACATCAAAGCAGCGCTGCAAGCCTCTGGATTGACTATAGATCAATTGTTGATGAAATGCCTTTCCTCAGACAAGATACTAGATCCTTCCTTGTTTGATCAGGTAGAGTTCTTACCAAACCAGCCTTGCCATGATCAGAAGCTCATATATGACTGCATCAATGAAGTTCTCACGGGGGTTTGTCAAAATTACTTTGGCGTCTCACCTTGCGTGTCATTTGCAAGTCCTGGCATAAGGCCTACTCCGAATATGAAGAAGGTCATTGTCAAGGTCTGGGAAGGAGTGTGCTGGGATTTCCTTCCCTTGCCCCCGCCACGTACCTTGGACAAAATTGTCAAGAAAGACATGGATAAAAATGGGGCATGGATGGACCTTAGACATGAAGCTGAAACAATTGGTTCTGAAATAGGGGAAGCCATTCTTGAAGATCTGATGGAAGATGCAATACTAAGCTGTGTAAGCAAAAGTCCAGAAAGTGAATGTTCTCATCTTCAAATTGAATACAGGGACAATGAAAACAGCAAAAATGTGTAA 2838 0.3936 MAKKSQRRSVRYEKDKSGCMWGFISMFDFRNGHSTRKMIADKRRSSKHAVGVAHSKNKFEMLSNLDEVCQGSSDSGESRRHTVGTAANKPSVKKLIEEEMFIDQNAMKDTYSAQMESKESTLRREVLLKLDSKRKKKSYKKNCDKDTKDLNLDATLKSEVTHNQHSRKQSKDNLDLDKMIEEFCHLRDACSMMHGNDGEEVGAQSNQKQAISESSRVAIREFVNQMIINGKDPAEARKFLCSHQLIEAIQLISSDKELFLSLLQHPNSLLLKCVQEFRNSQGTNENDYGCVTGSIFSEKDHGNMEHNRETVSHKKHNFFRKKIKSQSKGSENEDGDTNLSSRIVILKPGQMSLQNSETGNNLSSSQDSHDAVRYNGPSVRVSSHFSLTEIKNKLKHAMGRERHGNPEGISKRHPAAECQNNRPSSKAIGKDNVGMRSPNKDHFFIEKIARPTTGVMKGDKTGTTKDSELIVEHENGTYPKQRISNLYIEAKKHLCEIVGNGDEKIDLSSRQISRTLGKILSLPEYSFSPLGSPGRDWEHHFVTAQKRFSSSDKIWEDDKDNVSSKQGTFVGDLDQEMDHSEKHSSICDESSNNKVQEIKSDTNFSDNVDKAENICPIGDEIVTEDDIESAKEVNVLESTSEPVGVSAGKEDQNYDVSDISDCEKCSQCSKQAVKEESKPTSPLSSPSHSSTTKKIEELESATEVSGRPSPVSVLDTPFLEDDVNPDYSRFQPVEVPARPLQFEEQYSAPLNQINREKHCLQENELIYDYIKAALQASGLTIDQLLMKCLSSDKILDPSLFDQVEFLPNQPCHDQKLIYDCINEVLTGVCQNYFGVSPCVSFASPGIRPTPNMKKVIVKVWEGVCWDFLPLPPPRTLDKIVKKDMDKNGAWMDLRHEAETIGSEIGEAILEDLMEDAILSCVSKSPESECSHLQIEYRDNENSKNV 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02271 945 MobiDBLite consensus disorder prediction 397 436 - -
Cca01g02271 945 Pfam Domain of unknown function (DUF4378) 768 915 IPR025486 -
Cca01g02271 945 Pfam Protein of unknown function (DUF3741) 224 268 IPR022212 -
Cca01g02271 945 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 933 - -
Cca01g02271 945 MobiDBLite consensus disorder prediction 673 691 - -
Cca01g02271 945 PANTHER (, RELATED) 1 933 - -
Cca01g02271 945 MobiDBLite consensus disorder prediction 309 338 - -
Cca01g02271 945 MobiDBLite consensus disorder prediction 673 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02271 Cca-Chr1 51032935 51039203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02271 1 903 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 33.697 1.67e-110 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02271 - - gmx:102667950 1475.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02271 01 51032935 51039203 Cca01g02271 01 51032935 51039203 ECH
Cca07g01913 07 46204676 46208723 Cca01g02271 01 51032935 51039203 PCT