Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02267 ATGGCCAGTGATCCAAAGCATGAAAAGATGAACAACCTATGCACACAGCTAGCAGTTGCAGTGAGAAGCATTCAATGGAGCTATGGGATTTTCTGGGCACCTTCAACCACTCAAGAAAGGGTGCTGGAGTGGAGGGATGGCTACTATAATGGGGACATTAAGACAAGAAAAACAGTCCAAAGCATGGAATTGGAAATGAAGGCAGATAAAATAGGGGTTCAGAGGAGTGAGCAACTGAAGGAACTGTACAAGTTTCTTCTTGCAGGTGAATCTGACCCTCAAGCCAAAAGGCCTTCTGCTGCATTAGCTCCAGAGGACCTCTCAGATTTGGAGTGGTATTACTTGGTTTGCATGTCCTTTCTTTTCACTCACAACCAAAGTTTGCCTGGAAGAGCAGTGGAAATTGGTGAGACAGTGTGGCTGTGCAATGCTCAACATGCGGAAAGCAAAGTCTTCTCTCGTTCTTTGCTAGCAAAGAGTGCGTCTATTCAGACCGTGGTGTGTTTTCCCTATCGAGGAGGCGTTATTGAGCTAGGCACAACTGAATTGGTTACTGAGGATCCTAATCTCATTCAACATGTCAAGGCATGCTTCCTAGAAATCTCAAAGCCAACATGCTCTGACAAATCTTCCTCTGTCCTTGATAAACCAAATGATGACAAATATCCAATATGCACCAAGGGTGATCACAGGATGTTAGACACAATGCCCTTGGAGAACCCATGTTCCCTTGAAGAAAAAATCAAATTTGATCATGACCCCATCAATGAATTACAAGATGAACACAATGAAGATTCCAACATGGATTCTCCCGATGGTTGTGAGCATCCTTACCCTATGGATGAATCCTTGGTTGAGGGCATCAATGGTGTGCCATCTCAAGTTCATTTTGTGAATGATGCCTTAGTCATTGGTGCTCCAGATTCCCTGAGTTCTTGTGATTGCATGTCTGAAGCTTCTGAGAACCAAGGCAAGGCTTCCAAGAGTGTAGGCCAAACTCAAGTGGTGCAACTTCAAGAAGATTGTTATCATCCCAAAAGAAGATCCTTGGATGCTGGAGTTGGTGAAGACTTGTGCTACATAAAAACACTTTGTGCTATTTTGGGGAATTCAGCAACATTTAAACCAAATTCATATGCTGGAAACTCAAATTACAAGTCTAGTTTTGCCAAATGGAAGAAGGGTAGAGTCACTGAAAGGAAGAGGCCAAAGTTGCACCAAAGCATGTTAAAGAAGACTTTGTTTAAGGTCCCTTTTATGCACAGAAGTTGTTCATCTCTCAAGTCACAAAAAGAGAAGGACAGATTGGAATGGACTAGTAAATTGGAAAATGGTGATGGTTTCTTGGGGAATGTTGTCACCGATAAGAAAAGAGAAAATAAAAACTTTCTGGATGTCAAATCTTTGGCTCCATCGTCTATAAGTGAGATGGAGAAGATTTCAATTCTTGGGGACACAATTAAGTACTTGAAAAAGCTTGAAACAAGAGTGGAAGAGCTAGAATCTTACATGGAAGTTGCAGATCCTGAAGCAAGGACCAAAAGAAAATGCCCTGATGTTCTAGAGCAGATGTCAGATAACTATGGTGCCAGAAAGATTTGCATGGGAATGAAACCTTGGATAAACAAGAGGAAGGGTTGTGGTATTGATGAGATAGACACAGAGTTAGAGAGAATTGTTTCTGAAGATGCAAAGGCATTGGATGTGAAAGTCAATGTGAAGGAGCAGGAGGTTCTGATTGAGATGAAATGTCCCTACAGGGAATACATACTGTATGATATCATGGATACCATCAACAACCTACATTTAGATGCTCACACAGTTGAATCATCAACAAGTGATGGTGTTCTCTCATTGACACTTAAATCTAAGTTTCGAGGAGCAGCAACAGCACCAATGAGGATGATCAAAGAAGCACTCTGCAAAGTATCTGGAAATATGTGA 1944 0.4172 MASDPKHEKMNNLCTQLAVAVRSIQWSYGIFWAPSTTQERVLEWRDGYYNGDIKTRKTVQSMELEMKADKIGVQRSEQLKELYKFLLAGESDPQAKRPSAALAPEDLSDLEWYYLVCMSFLFTHNQSLPGRAVEIGETVWLCNAQHAESKVFSRSLLAKSASIQTVVCFPYRGGVIELGTTELVTEDPNLIQHVKACFLEISKPTCSDKSSSVLDKPNDDKYPICTKGDHRMLDTMPLENPCSLEEKIKFDHDPINELQDEHNEDSNMDSPDGCEHPYPMDESLVEGINGVPSQVHFVNDALVIGAPDSLSSCDCMSEASENQGKASKSVGQTQVVQLQEDCYHPKRRSLDAGVGEDLCYIKTLCAILGNSATFKPNSYAGNSNYKSSFAKWKKGRVTERKRPKLHQSMLKKTLFKVPFMHRSCSSLKSQKEKDRLEWTSKLENGDGFLGNVVTDKKRENKNFLDVKSLAPSSISEMEKISILGDTIKYLKKLETRVEELESYMEVADPEARTKRKCPDVLEQMSDNYGARKICMGMKPWINKRKGCGIDEIDTELERIVSEDAKALDVKVNVKEQEVLIEMKCPYREYILYDIMDTINNLHLDAHTVESSTSDGVLSLTLKSKFRGAATAPMRMIKEALCKVSGNM 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02267 647 Gene3D - 456 524 IPR036638 GO:0046983
Cca01g02267 647 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 508 IPR036638 GO:0046983
Cca01g02267 647 PANTHER TRANSCRIPTION FACTOR TT8 5 645 - -
Cca01g02267 647 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 198 IPR025610 -
Cca01g02267 647 PANTHER TRANSCRIPTION FACTOR MYC1 5 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02267 Cca-Chr1 50910528 50922802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02267 1 644 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 39.013 4.37e-125 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02267 - - gmx:100783746 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02267 01 50910528 50922802 Cca01g02267 01 50910528 50922802 ECH