Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02251 ATGGATCGAGGGGACCAAATGACATTACCTGGTTCTGCATCATACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAGCCTGAACTTCACAATTCACCTAATATTCGTCCTTTGTCTAATCCCAATCTACCATTTCAATCGAGCATTGGGGGTGGTGGTACCATTGGATCCACATTGCCATTAGAGTCTTCAGGAATTTCATCTCCATGTGTCAATGTGAGTGCTCCTTCTGGGACTATGACTGGGGAAACTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCTGATGGTGCTGTGTCGTTGGCGTTGACTCCAACTCCAGCTAGTCATCCTGGAACCTTGTCACAAGGCCAGAAACGGGGCAGAGGCCGCCCGCCTGGCTCTGGAAAGAAACAACAGTTGGCTTCTCTTGGTGAATTGATGTCTGGCTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACGAAAATCATGTCATTTTCTCAGCAGGGACCTAGGGCTATATGTATTATGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGCCAATCTTCAACATCAGGTGGCTCTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCTGATAGTGGTGGCCCTCGCAGTCGAACTGGTGGATTGACTGTTTCCCTTGCAAGTCCGGATGGCCGTGTCATTGGTGGAGGAGTTGGTGGAGCCCTTATTGCTGCAAGTCCTGTTCAGGTGATACTTGGGAGCTTTATATGGGGCGGATCGAAGACCAAAATCAAGAAAAAAGATGGTCCAGAAGTTGTGGAAGCTGCTATAGAGTCAGATCATCAGACAGTTCATAATCCAGTTGCAGTGAACAGCATTTCCCCAAATCAAAATCTTACTCCGCCCACATCTCTAAGTCCTTGGCCTGCATCGCGATCATTGGATATGCGCAATTCCCATATTGACATTGACTTAATGCGTGGGTGA 1023 0.478 MDRGDQMTLPGSASYYMQRGIPGAGTQPELHNSPNIRPLSNPNLPFQSSIGGGGTIGSTLPLESSGISSPCVNVSAPSGTMTGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGTLSQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPRAICIMSANGAVSTVTLRQSSTSGGSVTYEGRFEILCLSGSYLVADSGGPRSRTGGLTVSLASPDGRVIGGGVGGALIAASPVQVILGSFIWGGSKTKIKKKDGPEVVEAAIESDHQTVHNPVAVNSISPNQNLTPPTSLSPWPASRSLDMRNSHIDIDLMRG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02251 340 CDD DUF296 153 267 IPR005175 -
Cca01g02251 340 MobiDBLite consensus disorder prediction 304 323 - -
Cca01g02251 340 Gene3D - 154 291 - -
Cca01g02251 340 MobiDBLite consensus disorder prediction 1 137 - -
Cca01g02251 340 MobiDBLite consensus disorder prediction 28 82 - -
Cca01g02251 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Cca01g02251 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 272 - -
Cca01g02251 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 310 - -
Cca01g02251 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Cca01g02251 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Cca01g02251 340 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Cca01g02251 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 310 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02251 Cca-Chr1 50734205 50742524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02251 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.556 1.12e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02251 - - gmx:100783475 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02251 01 50734205 50742524 Cca01g02251 01 50734205 50742524 ECH
Cca07g01898 07 45972870 45980525 Cca01g02251 01 50734205 50742524 PCT