Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02237 ATGAACACCAACAACAACAGAGAGAGGTACCCTCCCGGGATTGGCCTCGCCCGAGGTGCTTTCAATCCCAACCTCCACCTCAACCGGAATCCcaacctcaaccacaacctcaaccacaaccacaaccacTCGTTTCAGGTCCGGCCTCCGTTCCAGCAACAACCGCACTATGTGCAGAGGCATTTGTTGCAACCACTGCAAcagcagcagcagcagcagcagcaacagcaacagcagcagTGGCTCAGAAGAGACGTTAACGCCGTTGACGAGGTCGAGAAGACCGTGCAGTCCGAAGCCGTGGATTCCAGTAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCACCTGATACACGCTATAGGACAGAGGATGTAACAGCAACTAAAGGGAATGAATTTGAGGATTACTTTTTGAAGCGAGAGCTTCTCATGGGAATATATGAAAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATCCCTATTGCTCTAACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCTCTGGAAAAAATTGACCAGGATATTAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAGTTAGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACCGGTGGTACCAGCCTGAAGGATGATATCATGCGCTTATATCAACCAGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAATTCCAACCATCTATAGAGCAGCTGATTCATTTTCTACCAACAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAGCCTTACGTCATCAACCTTATGGATGAGCTTACTCTGAAGGGTATTACGCAATTTTATGCATTTGTGGAAGAAAGGCAGAAAGTCCACTGCTTAAATACTCTATTTTCTAAGCTTCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACTGAACTTGGCTATTCGTGTTTTTATATTCATGCAAAGATGCTGCAAGATCATCGTAATAGGGTGTTTCATGACTTCCGTAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATTGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCGGAGACTTATTTGCATAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGGCTTGCGGTGAACTTGATTACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCACCACAAATTGATCAGGCAATTTATTGCCGGTGA 1524 0.3957 MNTNNNRERYPPGIGLARGAFNPNLHLNRNPNLNHNLNHNHNHSFQVRPPFQQQPHYVQRHLLQPLQQQQQQQQQQQQQQWLRRDVNAVDEVEKTVQSEAVDSSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDINVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02237 507 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Cca01g02237 507 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 507 - -
Cca01g02237 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Cca01g02237 507 Gene3D - 66 337 IPR027417 -
Cca01g02237 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 487 IPR027417 -
Cca01g02237 507 CDD SF2_C_DEAD 345 474 - -
Cca01g02237 507 SMART helicmild6 384 465 IPR001650 -
Cca01g02237 507 SMART ultradead3 152 348 IPR014001 -
Cca01g02237 507 CDD DEADc_DDX6 135 335 - -
Cca01g02237 507 Pfam Helicase conserved C-terminal domain 359 465 IPR001650 -
Cca01g02237 507 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Cca01g02237 507 Gene3D - 338 507 IPR027417 -
Cca01g02237 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Cca01g02237 507 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 3 507 - -
Cca01g02237 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Cca01g02237 507 MobiDBLite consensus disorder prediction 97 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02237 Cca-Chr1 50573031 50578912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02237 133 504 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 1.22e-93 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02237 K12614 - gmx:106794117 883.634