Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g02237 | ATGAACACCAACAACAACAGAGAGAGGTACCCTCCCGGGATTGGCCTCGCCCGAGGTGCTTTCAATCCCAACCTCCACCTCAACCGGAATCCcaacctcaaccacaacctcaaccacaaccacaaccacTCGTTTCAGGTCCGGCCTCCGTTCCAGCAACAACCGCACTATGTGCAGAGGCATTTGTTGCAACCACTGCAAcagcagcagcagcagcagcagcaacagcaacagcagcagTGGCTCAGAAGAGACGTTAACGCCGTTGACGAGGTCGAGAAGACCGTGCAGTCCGAAGCCGTGGATTCCAGTAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCACCTGATACACGCTATAGGACAGAGGATGTAACAGCAACTAAAGGGAATGAATTTGAGGATTACTTTTTGAAGCGAGAGCTTCTCATGGGAATATATGAAAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATCCCTATTGCTCTAACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCTCTGGAAAAAATTGACCAGGATATTAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAGTTAGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACCGGTGGTACCAGCCTGAAGGATGATATCATGCGCTTATATCAACCAGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAATTCCAACCATCTATAGAGCAGCTGATTCATTTTCTACCAACAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAGCCTTACGTCATCAACCTTATGGATGAGCTTACTCTGAAGGGTATTACGCAATTTTATGCATTTGTGGAAGAAAGGCAGAAAGTCCACTGCTTAAATACTCTATTTTCTAAGCTTCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACTGAACTTGGCTATTCGTGTTTTTATATTCATGCAAAGATGCTGCAAGATCATCGTAATAGGGTGTTTCATGACTTCCGTAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATTGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCGGAGACTTATTTGCATAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGGCTTGCGGTGAACTTGATTACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCACCACAAATTGATCAGGCAATTTATTGCCGGTGA | 1524 | 0.3957 | MNTNNNRERYPPGIGLARGAFNPNLHLNRNPNLNHNLNHNHNHSFQVRPPFQQQPHYVQRHLLQPLQQQQQQQQQQQQQQWLRRDVNAVDEVEKTVQSEAVDSSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDINVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR | 507 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g02237 | 507 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 280 | 288 | IPR000629 | - | |
Cca01g02237 | 507 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 3 | 507 | - | - | |
Cca01g02237 | 507 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 133 | 161 | IPR014014 | GO:0003724 | |
Cca01g02237 | 507 | Gene3D | - | 66 | 337 | IPR027417 | - | |
Cca01g02237 | 507 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 203 | 487 | IPR027417 | - | |
Cca01g02237 | 507 | CDD | SF2_C_DEAD | 345 | 474 | - | - | |
Cca01g02237 | 507 | SMART | helicmild6 | 384 | 465 | IPR001650 | - | |
Cca01g02237 | 507 | SMART | ultradead3 | 152 | 348 | IPR014001 | - | |
Cca01g02237 | 507 | CDD | DEADc_DDX6 | 135 | 335 | - | - | |
Cca01g02237 | 507 | Pfam | Helicase conserved C-terminal domain | 359 | 465 | IPR001650 | - | |
Cca01g02237 | 507 | Pfam | DEAD/DEAH box helicase | 158 | 322 | IPR011545 | GO:0003676|GO:0005524 | |
Cca01g02237 | 507 | Gene3D | - | 338 | 507 | IPR027417 | - | |
Cca01g02237 | 507 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 344 | 504 | IPR001650 | - | |
Cca01g02237 | 507 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 | 3 | 507 | - | - | |
Cca01g02237 | 507 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 164 | 334 | IPR014001 | - | |
Cca01g02237 | 507 | MobiDBLite | consensus disorder prediction | 97 | 123 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g02237 | Cca-Chr1 | 50573031 | 50578912 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g02237 | 133 | 504 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 38.235 | 1.22e-93 | 289 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g02237 | K12614 | - | gmx:106794117 | 883.634 |