Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02236 ATGATTCAACTTCTGAACGCATTTATTGCTGGAAACTCGCCTATAGTCCTTGCAAGCTCTGTAACATTAAATACTCTCTCCTCAAATAGCCATAAAGATCACACACATTTTTCTTTCACCAGTAAATCCCTTTCCAATTTATGTCACAATACCCTCTCCCAGCCTTCAAGTCTTGCCAACGTACACGAGACTACTCACTTGAAAGTAAGGATGGGAAGAACACCTTGTTGTGAGAAGATGGGGTTGAAGAAAGGTCCTTGGACAGCTGAAGAGGATGAGATTCTTGTCAATTATATAAAAAAGAATGGTGGTCATGGAAGTTGGCGTTCTCTTCCTAAGTTAGCAGGTCTTCTCCGTTGTGGAAAGAGTTGTCGGCTGAGATGGACAAACTACCTCAGACCAGATATTAAACGTGGTCCTTTTACACTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCAATAGCCTCTCAGCTACCAGGCAGAACAGACAATGAGATAAAAAACTTATGGAACACCCACTTGAAGAAACGTCTCATTTGCATGGGCCTGGACCCACAAACCCACCAGCCACTGGGCTCTTCACGTAACCCAAACGACAAGGCCCATGGATCCTCCACTTCAACCCGCCACATGGCCCAATGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAATCATCCTCCTTTGGGTCCAAACCTGACTCTGACTATTTTCTCCGAATCTGGAACTCTGAAGTTGGAGAATCTTTCCGAGGTGTGCACAAATCAGATAATAACAACAAAAGTAGTTCTCAGAGTCCCATTTCTGTAGGGTCCTATTCCAACAAATGTGGCTCAGTTTCAGTTTCAGCCACCACTACTTCCAACCATGTTGCATCATCAAGCATTGTGAAAGAAGATTTGGATTCTTCATGCTCTAGTGAACTGGAAGACTCATCTGACACTTCATTACAGCTCTTGTTAGACTTTCCCATAAACAATGACATGAGCTTCTTGGAATGA 1038 0.4393 MIQLLNAFIAGNSPIVLASSVTLNTLSSNSHKDHTHFSFTSKSLSNLCHNTLSQPSSLANVHETTHLKVRMGRTPCCEKMGLKKGPWTAEEDEILVNYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLGSSRNPNDKAHGSSTSTRHMAQWESARLEAEARLSRESSSFGSKPDSDYFLRIWNSEVGESFRGVHKSDNNNKSSSQSPISVGSYSNKCGSVSVSATTTSNHVASSSIVKEDLDSSCSSELEDSSDTSLQLLLDFPINNDMSFLE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02236 345 MobiDBLite consensus disorder prediction 194 228 - -
Cca01g02236 345 Gene3D - 81 138 - -
Cca01g02236 345 MobiDBLite consensus disorder prediction 263 285 - -
Cca01g02236 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 187 IPR017930 -
Cca01g02236 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 71 345 - -
Cca01g02236 345 ProSiteProfiles Myb-like domain profile. 79 132 IPR001005 -
Cca01g02236 345 Pfam Myb-like DNA-binding domain 84 132 IPR001005 -
Cca01g02236 345 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Cca01g02236 345 MobiDBLite consensus disorder prediction 268 285 - -
Cca01g02236 345 Gene3D - 140 187 - -
Cca01g02236 345 SMART sant 83 134 IPR001005 -
Cca01g02236 345 SMART sant 137 185 IPR001005 -
Cca01g02236 345 SUPERFAMILY Homeodomain-like 80 179 IPR009057 -
Cca01g02236 345 PANTHER TRANSCRIPTION FACTOR MYB104-RELATED 71 345 - -
Cca01g02236 345 CDD SANT 140 183 IPR001005 -
Cca01g02236 345 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Cca01g02236 345 MobiDBLite consensus disorder prediction 196 222 - -
Cca01g02236 345 CDD SANT 86 132 IPR001005 -
Cca01g02236 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 132 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02236 Cca-Chr1 50555609 50558893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02236 71 345 MYB Transcription Factor Family AT3G61250 63.699 2.65e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g02236 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02236 K09422 - gmx:100788528 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01892 07 45907637 45910266 Cca01g02236 01 50555609 50558893 PCT