Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02229 ATGTCATTTACAGGAACTCTTGACAAATGCAATGCATGTGACAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATTCCTTACCACAAAAACTGCTTCAAATGTAGCCACTGCAAGGGACATCTCACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGACTCATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAACAAGAACTTTGCAAAGTCTACTGAGAGGCAAAGCGACCTGAATAGAGCACCAAGCAAGGTATCTTCCATGTTCAGTGGCACCCTGGACAAATGTTCAGTCTGCTCAAAAACAGTCTATCCATTGGAAAAGATGACACTGGAAGGAGAATGCTTCCACAAGACTTGTTTTAGGTGTGAACATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCTCTAGATGGTGTCCTCTACTGCAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCCTCCACACCTCCTGAGCCACTATTTATTGAGGAGCCATCACATGCACCAGAAGAATCTGAGGACCAAACACAAGAAGAAGAAACCTCTTGA 630 0.4429 MSFTGTLDKCNACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGHLTMCTYSSMDGVLYCKTHFEQLFKESGNFNKNFAKSTERQSDLNRAPSKVSSMFSGTLDKCSVCSKTVYPLEKMTLEGECFHKTCFRCEHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFIEEPSHAPEESEDQTQEEETS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02229 209 MobiDBLite consensus disorder prediction 176 209 - -
Cca01g02229 209 Gene3D Cysteine Rich Protein 101 168 - -
Cca01g02229 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Cca01g02229 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cca01g02229 209 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Cca01g02229 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cca01g02229 209 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Cca01g02229 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Cca01g02229 209 Pfam LIM domain 104 159 IPR001781 -
Cca01g02229 209 Pfam LIM domain 10 65 IPR001781 -
Cca01g02229 209 Gene3D Cysteine Rich Protein 5 100 - -
Cca01g02229 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cca01g02229 209 SMART lim_4 103 155 IPR001781 -
Cca01g02229 209 SMART lim_4 9 61 IPR001781 -
Cca01g02229 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Cca01g02229 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02229 Cca-Chr1 50490255 50492422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca01g02229 LIM 5.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02229 - K09377 gmx:100305845 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02229 01 50490255 50492422 Cca01g02229 01 50490255 50492422 ECH
Cca07g01890 07 45890356 45892857 Cca01g02229 01 50490255 50492422 PCT