Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02228 ATGGATATAGCTTTCAGTTTGTCAAAGTCAAATGTGGTGTTGGATGGTTTGGATTCTTGCATTGTATTTGGAGGGAGAGGTTTTGGTTGTTCTTTTCTCGGCAACTCGAGGACTATTTCAAAGGCTCGTTTTAGTAGGAGAAGTCCAAGAGTAGACTGCGTAGGTGAGTTGAGTGTTTCAAATGGGAAGAGGAGTTTGTCTTGGAAGAATAATAAACATTTTAGGGGAAATAGGGAGGTTTGGTCAAATTGTCAGGGTGATGATTCTTTAGCATATGTCAATGGCAATGGTCGGAATGTTGATAGGGTGGAAGGTGTGGGTGAGGACTCTGATTTGAGGTCCATTTCCGGTGCTGAATCGAGTGTACCTTTGGGAGGAGGAGAAGAAGGGAGGAAagaagttgggggtgaagtagaagtagaggtacaaAATGTGGATGAATTGAAAGAACTGTTGCAAAAGGCCATGAAAGAATTAGAAGCTGCTCGAGTTAACAGCATTGTGTTTGAGGAAAAGGTTAAAAAGATATCGGAGACTGCGATTTTTTTGCAGGATGAAGCAGCAGGTGCTTGGAACAATGTTACTTCTACCCTTGATGTCATCCAAGATATTGTGGGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAAGCAACAATGGCTCTTTCTCTTGCTGAGGCAAGGCTTCAAGTAGCCATAGACTCTTTGGAGGTTACAAAAGGGGTTTACGATTCCCCACAAGGTTCTAACAAGAGTAATGGTGATAAAGATATAATGCAAGAGGAGAAAGAACTTTTGGTTGCTCAGGAAGATATCAGGGAATGCCAGACAAATTTAGCAAATTGTGAGAATGACCTGAGATGCTTGCAATGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAAATTGCATGAACTTGCAGAACAGGCACAGAAGAAAGTAGCAAAAGCAGAAGAAGATGTCACAAAAATAATGCTTTTAGCAGAGCAAGCTGTTGCCGCTGAACTTGAGGCTGCACAACGCATGAATGATGCCGAGATTGCATTACTGAAAGCAGACAGATCTGCCCCAAATGTTAATGCTGATGCCATAGACACTCTACAAGTACAAGATGTTGTGGCTATTTCTGAGGAGAAGGTGGTTCAAGGTTTTTCTGGTGATGATGCTGATAAAAGAGAGATTGACTTCTCAACTGATGATGAGCTGTTGCTTGCCAAGCAATCATCAGAAACACTATCTGATAACACCAGCCAAAGTTTGGAAGACTTGGCACAGTCTGATTATCTGAGTGATCATGAGAATGGACAGTTAAGCTTAGACTCTTCTAAAGAAGCTGAAATTGAAATAGAAAAGTCGAAGAATGTAGTTCAAACAAAAAAGCTGGAAACACAAAAGGATTTTACTAGAGATAACTCACCGTTTGCTCCTAAGGCATTACAGAAGAAATCTTCCCGATTTTTTCCAGCATCATTCTTTTCTTTTACTACTGATGAGACCGATTACACACCAGAATCACTTTTTCATGGTATTGTGGAGTCTGTACAGAAGCAACTACCCAAGCTGGTTTTTGGGTTATTGTTAATTGGAGCAGGGGTTGTGTTCTATGCCAATAAAACAGAGAGGAATGCTCAGCTGCTTCAGCAGCCAGAAGTCATTGCAACCACTGTTGAAGAAGTTTCTTCAACTACAAAGCCTCTGGTTAGACAGCTTCAGGAGCTTCCCTGGAGACTTAAGAAAATTATTGCATCATTACCTGATCAAGAGGTGGATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTACCGTTATTTCAAAAGATTCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTAATTGGGCCTTATGGTCTCTCCATCATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAGTTTGGAGTTGTTTTCCTGTTATTCAACATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGCTCAATGAAGAAATACGTCTTTGGATTAGGCTCTACTCAGGTTTTGGTGACTGCTGTAGTTGTCGGCTTGGTGGCTCATTATATTTGTGGTCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCTTCAACTGCTGTTGTTCTGCAGGTGTTACAGGAGAGAGGTGAGAGCACGTCACGGCATGGAAGGGCTACATTTTCTGTTTTGCTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTTATTTCGCCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATCACTGCCATAATTGCAGGTGGACGGTTGCTGCTTCGACCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCTAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTAACAGCCAGGGCTGGACTTTCCATGGCATTAGGGGCTTTTTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCCGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGGTAGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATTACAGGGGCTCTGGGACTCTTGATATGCGGCAAGACTTTGTTGGTTTCTTTAATTGGCAGAATGTTTGGTATTTCTCTCATTTCTGCCATTAGAGTGGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGATGTCCTCTTTACTGTTTCTCGTTGTGGGAATTTCAATGGCCCTCACTCCATGGCTAGCTGCAGGAGGACAGCTTCTTGCTTCCCGTTTTGAGCTGCATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAAATCATATTATTATTTGTGGATTTGGGCGAGTTGGGCAGATCATTGCACAACTTCTTTCTGAGCAACTTATCCCTTTTGTTGCATTAGACGTGAGAAGTGATAGAGTCACAGTTGGGCGTTCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAGGTTGGGGCCGAAAGGGCAAGTGCTGCTGCAGTAACCCTAGATTCCCCGGGTGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGCACTTCCCAAACGTGAAGACTTTTGTTCGTGCTCACGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACCGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTACAACTAGCAGCTGCCGTGCTTGCTCAGGCTAAACTTCCTACATCGGAGATTGCAGCAACTATAAATGAATTCAGATCTCGCCATCTGTCTGAGCTCACTGAACTATCCGAATCAAATGGAAATTCTTTTGGATATGGATATAATAGAATTACGAGCAAACCCAAATCTCAATCCCCAGATTCATCAGATGATACTCAAGTCTCTGAAGGGAAACTGGCGACATGA 3603 0.4258 MDIAFSLSKSNVVLDGLDSCIVFGGRGFGCSFLGNSRTISKARFSRRSPRVDCVGELSVSNGKRSLSWKNNKHFRGNREVWSNCQGDDSLAYVNGNGRNVDRVEGVGEDSDLRSISGAESSVPLGGGEEGRKEVGGEVEVEVQNVDELKELLQKAMKELEAARVNSIVFEEKVKKISETAIFLQDEAAGAWNNVTSTLDVIQDIVGQEFVAKEAVQKATMALSLAEARLQVAIDSLEVTKGVYDSPQGSNKSNGDKDIMQEEKELLVAQEDIRECQTNLANCENDLRCLQCRKEELQNEVNKLHELAEQAQKKVAKAEEDVTKIMLLAEQAVAAELEAAQRMNDAEIALLKADRSAPNVNADAIDTLQVQDVVAISEEKVVQGFSGDDADKREIDFSTDDELLLAKQSSETLSDNTSQSLEDLAQSDYLSDHENGQLSLDSSKEAEIEIEKSKNVVQTKKLETQKDFTRDNSPFAPKALQKKSSRFFPASFFSFTTDETDYTPESLFHGIVESVQKQLPKLVFGLLLIGAGVVFYANKTERNAQLLQQPEVIATTVEEVSSTTKPLVRQLQELPWRLKKIIASLPDQEVDEEEASLFDMLWLLLASVVFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSTQVLVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAVVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITGALGLLICGKTLLVSLIGRMFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQMSSLLFLVVGISMALTPWLAAGGQLLASRFELHDVRSLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVTVGRSLDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELSESNGNSFGYGYNRITSKPKSQSPDSSDDTQVSEGKLAT 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02228 1200 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1199 - -
Cca01g02228 1200 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1001 1142 IPR036291 -
Cca01g02228 1200 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 603 883 IPR004771 GO:0006812|GO:0008324|GO:0016021
Cca01g02228 1200 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1199 - -
Cca01g02228 1200 MobiDBLite consensus disorder prediction 1172 1200 - -
Cca01g02228 1200 Pfam Sodium/hydrogen exchanger family 601 972 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca01g02228 1200 ProSiteProfiles RCK N-terminal domain profile. 1004 1126 IPR003148 GO:0006813
Cca01g02228 1200 Coils Coil 138 165 - -
Cca01g02228 1200 Pfam TrkA-N domain 1005 1118 IPR003148 GO:0006813
Cca01g02228 1200 Gene3D - 592 978 IPR038770 -
Cca01g02228 1200 Gene3D - 1000 1164 - -
Cca01g02228 1200 Coils Coil 258 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02228 Cca-Chr1 50472563 50487144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02228 84 1199 Inorganic Solute Cotransporters AT4G00630 69.285 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02228 - - gmx:100791174 1924.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02228 01 50472563 50487144 Cca01g02228 01 50472563 50487144 ECH
Cca07g01887 07 45862723 45876741 Cca01g02228 01 50472563 50487144 PCT