Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02227 ATGGCTGAGAAGAGTTACGAAGACGAAGCGGAGACACTCTTCGCCACGTTTCCTGAGCTGCGCGATGTGGCCGCTCCAATGACGCTGATGGAGAACATGAACGCCGCACACATCCAATTTTTGAATCTCACCGATCAATCACCGCCGCAACGCAACGACGCTCCCCACACTCCGTCAATTCGCCGGAATCAGGTTCCTCTGGTGTCCGCAACCGTCCAACAGCACTCGCCGCCGCAACAGACTCCGGCTGTGGCCGCGTCGCAGGCGGAACACTCCTCACCGGAGGTTGCCAACACTCCGGCGAGTCAGGTCGAAGTCCAGCCGCCACAAAACGGTGGTCCGTCGCCGTCGGTGTCCGTTACCGGAAAGAGAATCAGATGGAGCGAACTGGAACACAAGTTATTTTTGCTTGGACTTGAGAAATGTGGGAAGGGAGATTGGCAAAATATTTCAAGATATTATGTTAAAACAAAAACATCAGCTCAAGTTGCAAGTCATGCTCAAAAATACTTTCTTCGTCATAATGGGTCAAGCAAGGAGAAGAAAAGAAAAAGTATTCATGATATAACTTTGCAAAATAAAAGGCCTGTCTCTCACCATCACGTACATCAGAATGTTCCTTCTCCAAAGATTACAATACCACAACAATCACACCCAATGAATCGTTCAGTTCCTTCTACAAATCTTGCAATGCCACAGTTGCATAATGTGCATCACTTAGTCCCTCACCACAATATTAATAGCCAGCAGCAAAATAGGGTTCCTACTCCAAACCTTACAATACAAAGGTCACCTAATATGCATCATTCAGTCCCTCACCACATTGACCAACAAAGATGGGCTCCTTCTACAAATCTTGCAGTGCAACAGTTGCATGATGTGCATCACTTAGTTCCTCACCATAATAACCAACAAAATAGGGTTCCTTCTCCAAACCTTACAATACAAAGGTCACCCAATATGCATCATTCAGTCCCTCACCACATTGGCCAACAAAGATGGGTTCCTTCCACAAATCTTGCAGTGCAACAGTTGAATGATGTGCATCACTTAGTTCCTCACCATAATAACCAACAAAGTAGGGTTCCTTCTCCAAATCTTACAATACAACAGTCACCTAATATGCACCATTCAGTCCCTCAGCACATTGGCCAGAAAAGCTGGGCTCCTTCTACAAATTTTGCAATGCAACAGATACATAATGTGCATCATTCACTTCCTCACCAAATTTACCATCAAAACCGGACTCCTACAAATCTTGCAATGCAACAACCACATAGAATGCATTTGACACAAGAAATGATCCATATGAACCCACCAGTGGTCAACATGCCTCATCAAATGGGTGGATTTAACAATGGCTTCCCACCAAACAATGTTTCATCATATGGGAGAATTTAA 1401 0.4504 MAEKSYEDEAETLFATFPELRDVAAPMTLMENMNAAHIQFLNLTDQSPPQRNDAPHTPSIRRNQVPLVSATVQQHSPPQQTPAVAASQAEHSSPEVANTPASQVEVQPPQNGGPSPSVSVTGKRIRWSELEHKLFLLGLEKCGKGDWQNISRYYVKTKTSAQVASHAQKYFLRHNGSSKEKKRKSIHDITLQNKRPVSHHHVHQNVPSPKITIPQQSHPMNRSVPSTNLAMPQLHNVHHLVPHHNINSQQQNRVPTPNLTIQRSPNMHHSVPHHIDQQRWAPSTNLAVQQLHDVHHLVPHHNNQQNRVPSPNLTIQRSPNMHHSVPHHIGQQRWVPSTNLAVQQLNDVHHLVPHHNNQQSRVPSPNLTIQQSPNMHHSVPQHIGQKSWAPSTNFAMQQIHNVHHSLPHQIYHQNRTPTNLAMQQPHRMHLTQEMIHMNPPVVNMPHQMGGFNNGFPPNNVSSYGRI 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02227 466 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 123 173 IPR006447 GO:0003677
Cca01g02227 466 MobiDBLite consensus disorder prediction 195 222 - -
Cca01g02227 466 SMART sant 123 173 IPR001005 -
Cca01g02227 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 175 IPR017930 -
Cca01g02227 466 Gene3D - 125 176 - -
Cca01g02227 466 MobiDBLite consensus disorder prediction 70 120 - -
Cca01g02227 466 Pfam Myb-like DNA-binding domain 126 171 IPR001005 -
Cca01g02227 466 ProSiteProfiles SANT domain profile. 126 175 IPR017884 -
Cca01g02227 466 CDD SANT 126 171 IPR001005 -
Cca01g02227 466 PANTHER TRANSCRIPTION FACTOR KUA1 116 283 - -
Cca01g02227 466 MobiDBLite consensus disorder prediction 208 222 - -
Cca01g02227 466 PANTHER TRANSCRIPTION FACTOR SRM1 116 283 - -
Cca01g02227 466 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02227 Cca-Chr1 50453412 50455728 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g02227 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02227 - - gsj:114417662 272.707