Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02216 ATGGAAGCATCAGCAGCTCAGAGAAAGCCGAAGAGGAAGCGAGTTGCAGCAGCAAGCGACCCTGAATTCGAACGTCTCAACTCACTTCCGTGGAACTCCGCACTTCCTCAACACGATGACGACGACGCTTTCTCCATGTTCATGGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGCGTATGGTTTGAATATTCCTGAACCTGGAGTTGACAAGAGGAAGAAGTCTAAACAGAACGAAAATGTGAAGGAGCGGCAGGAAGATGGAGTTGATGGTGCTTGTAGGGACGAGGTTGAAGCAGAATTGGATGAGAGCGTGAAGTCTAAAGagaagaaaaagaagaagaagaagaagaaaaagaagGATGCTAAAGAAGGGCAGAAAGTTGAGCAGACAGATGCTGGTTTGGATACTAATGTGAAGGATGATATTGGGGAGGAGGACATTGATGAAACTGAATTTTATGCATGGAATGATTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCATCACCGATACAGAAGGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAAACGGGATCTGGTAAAACACTTGCTTTTGGTTTGCCCATTTTGCAACGGCTTTTGGAGGAGAGGGAGAAGGCTGCAAATATGGTTGAAGAAAGTGATGAAGAACCTGAAAAGTATGCTCCTACAGGCTTTTTGAGGGCTCTTATTATTGCTCCGACAAGAGAACTTGCACTTCAGGTCACTGATCATCTTAAAGCAGTTGCCAAGTATATTAATATTAGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCAGAGATTGTCGTTGGGACTCCAGGAAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCACTGTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAATGGACATTTTAAGGAGTTGCAGTCAATAATTGATATGCTTCCCATGTCCAACATCTCTACTGAAGATAATTCTCAAAATGTACAAAGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAATTCAACAAAAGCAACCATTGGCAGATGGATTGAATTCTATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATAATTGATCTTACTAATCCGTCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCCCATTTGTATTATATTTTGACTGTCCATGGACAAGGCCGCACAATAGTTTTCTGTACGTCAATTGCAGCTTTACGCCATATTTCTTCCATACTGCGCATTCTTGGCATCAATGTTTGGACTCTTCACGCCCAAATGCAGCAGCGTGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCCGGTGTTAGAACTGTTGTACACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCAGAAGGTTGTAGTATTGCTTTAATATCACCGAGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCTAAGGATACCTTTCAGCGGTTTCCTCTAGAGAACTCTTTCATGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGAAAAGGCTGAGAAAAACTGGTTTGATCGGAATGCTACCTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAAGAGGAACAAGTGAACAAACATAAGAAAAAGAAGGCCAGCTCTAGACAATTGAAGAAATTGCAAGAGGAGCTCAAGATGCTGATTTCACGTCCATTACAATCAAAAACATTTTCGCATCGGTATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAGCAGTTGCAGCAATTAGCAAGGCAAAAACTAAGTGATCAACTGGGTTCAGGACTAGGTAAAAAGGGAAGATTAGTTGTGATTGGTCAAGATTGTGTGGAAGCACTTCAGGCACTTAGAAGTGCTGGTGAAGAGGTGCGAATGGATGTCAAGAATTTGGCAGGAAAACAGAGAAATGTGGAGAATCTAAAAAGAAAGCGAAAAGAGGAGAAGAAACGTTTGCATGATCAGCGTAGAAAGCAGAAGAGAAAGCTAAAGCACGGTGATGAATAG 2394 0.4206 MEASAAQRKPKRKRVAAASDPEFERLNSLPWNSALPQHDDDDAFSMFMGSNELEGGFLSLEEIDEAAYGLNIPEPGVDKRKKSKQNENVKERQEDGVDGACRDEVEAELDESVKSKEKKKKKKKKKKKDAKEGQKVEQTDAGLDTNVKDDIGEEDIDETEFYAWNDLRLHPLLMKAICKLGFKEPSPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKAANMVEESDEEPEKYAPTGFLRALIIAPTRELALQVTDHLKAVAKYINIRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISTEDNSQNVQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIQQKQPLADGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDTFQRFPLENSFMPEVLKRLSLARQIDKITRKDSQEKAEKNWFDRNATSVELVTENYDSEEEQVNKHKKKKASSRQLKKLQEELKMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDQLGSGLGKKGRLVVIGQDCVEALQALRSAGEEVRMDVKNLAGKQRNVENLKRKRKEEKKRLHDQRRKQKRKLKHGDE 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02216 797 MobiDBLite consensus disorder prediction 764 797 - -
Cca01g02216 797 MobiDBLite consensus disorder prediction 69 146 - -
Cca01g02216 797 MobiDBLite consensus disorder prediction 75 116 - -
Cca01g02216 797 CDD SF2_C_DEAD 449 578 - -
Cca01g02216 797 Gene3D - 446 690 IPR027417 -
Cca01g02216 797 Coils Coil 102 133 - -
Cca01g02216 797 MobiDBLite consensus disorder prediction 1 21 - -
Cca01g02216 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 584 IPR027417 -
Cca01g02216 797 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 333 341 IPR000629 -
Cca01g02216 797 Gene3D - 111 407 IPR027417 -
Cca01g02216 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 448 609 IPR001650 -
Cca01g02216 797 PANTHER RNA HELICASE 80 717 - -
Cca01g02216 797 Coils Coil 222 242 - -
Cca01g02216 797 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g02216 797 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 80 717 - -
Cca01g02216 797 Pfam DEAD/DEAH box helicase 187 394 IPR011545 GO:0003676|GO:0005524
Cca01g02216 797 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Cca01g02216 797 Coils Coil 645 685 - -
Cca01g02216 797 SMART helicmild6 488 569 IPR001650 -
Cca01g02216 797 CDD DEADc_DDX24 173 438 - -
Cca01g02216 797 MobiDBLite consensus disorder prediction 775 789 - -
Cca01g02216 797 MobiDBLite consensus disorder prediction 130 146 - -
Cca01g02216 797 Pfam Helicase conserved C-terminal domain 460 568 IPR001650 -
Cca01g02216 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 411 IPR014001 -
Cca01g02216 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 357 IPR027417 -
Cca01g02216 797 Coils Coil 760 791 - -
Cca01g02216 797 SMART ultradead3 181 411 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02216 Cca-Chr1 50285006 50295907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02216 163 579 Eukaryotic Initiation Factors Gene Family AT5G11200 28.767 1.90e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02216 K14805 - gmx:100806018 1346.64