Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02215 ATGAAGAAGCTCAATCTATTACTCAACAAGTGCAAGAGCTTGTCAAAGCAACTAGGAAGATCTTCATCACATAGTAGCCTAAGGTCCAAATTTGCTAAGGAAGACTTATCATGGGAAGGACATGGCATGCAAGAAGATGAACAGTGTGAAACTATATTTGTTGGCAGCACAAGGAAACGGTATATGATAAGCTCCAAGTATCTGAAACATCCTCTTCTGGAAGCTCTGATCAACAAGTCAAAGCAAAAGGGAAGTGATGAAAGTGTTTTGGTGGTCAACTGTGAAGTGGTTCTGTTTGATCATCTATTGTGGATGCTAGAAAATGCAGATCCTAAGTTTGGTTCTGACTCTTTGGAGGAATTGGCTGAACTCTATGTGTTTTAA 384 0.3958 MKKLNLLLNKCKSLSKQLGRSSSHSSLRSKFAKEDLSWEGHGMQEDEQCETIFVGSTRKRYMISSKYLKHPLLEALINKSKQKGSDESVLVVNCEVVLFDHLLWMLENADPKFGSDSLEELAELYVF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02215 127 Pfam Auxin responsive protein 12 106 IPR003676 GO:0009733
Cca01g02215 127 PANTHER EXPRESSED PROTEIN 4 127 - -
Cca01g02215 127 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 127 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02215 Cca-Chr1 50278724 50279529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02215 51 108 Calmodulin-binding Proteins AT5G20810 36.667 6.18e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02215 - - gmx:100527910 193.356