Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02212 ATGCCTCGTGGAACGCTTGAAGTTGTTCTGATCAGCGCCAAAGGCCTCGAGGACAATGATTTTCTCTCCAGCATAGATCCTTATGTGATTCTCACATACAGGGCACAGGAGCACAAGAGCACTGTGCAAGAAGGTGCTGGATCCAACCCACAATGGAATGAGAGTTTTCTTTTCACTGTCTCTGACAGTGCCTCTGAACTTAATCTAAAGATAATGGATAAAGACAAGTTTTCTGAAGATGATTCTCTTGGCGAGGCAATCATTCATTTAGATCCAGTGTTTGAAGAAGGTAGCCTTCCAGAAACTGTTTACAAGGTTGTGAAGGACCAAGAATACTGTGGAGAGATTAAGGTGGCTTTAACTTTTACTGCTGAGAGAAATGAGGAGCGTTACACCGACCAGGATGAGAGCTATGGTGGATGGAAAGAATCGAGTGATGAATTTTAA 447 0.4318 MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSTVQEGAGSNPQWNESFLFTVSDSASELNLKIMDKDKFSEDDSLGEAIIHLDPVFEEGSLPETVYKVVKDQEYCGEIKVALTFTAERNEERYTDQDESYGGWKESSDEF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02212 148 MobiDBLite consensus disorder prediction 129 148 - -
Cca01g02212 148 Gene3D C2 domain 2 124 IPR035892 -
Cca01g02212 148 Pfam C2 domain 4 98 IPR000008 -
Cca01g02212 148 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cca01g02212 148 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Cca01g02212 148 PANTHER C2 DOMAIN-CONTAINING 1 148 - -
Cca01g02212 148 SMART C2_3c 5 102 IPR000008 -
Cca01g02212 148 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02212 Cca-Chr1 50265384 50267651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02212 4 94 C2H2 Transcription Factor Family AT4G21160 37.363 4.23e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02212 - - gmx:100500006 257.684