Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02194 ATGAGTTTTGGGGGTTTTTTGGAGAACAAGTCAGGTAGTGGCGGTGCCAGAAACGTTTCAGACATTCCTTACAACAACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTCGTGACCACTACTACTCCCACTTTGGCCAAGTCCATGTTCAACTCTCCGGGGCTGTCTCTGGCACTTCAAACCAATATAGATGGCCAAGAGGATGTGAATAGAATGGATAACTTCGAACCAAACGGTTTGAGAAGAAGCAGAGAGGAGGAACATGAAAGCAGATCTGGCAGCGACAACATGGACGGCGCCTCCGGCGATGAACACGACGCCGCCGACAACCCTCCCAGGAAAAAACGCTATCACCGACACACTCCCCAACAGATACAAGAGCTTGAAGCGTTGTTTAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGGTTGGAACTTAGCAAGAGGTTGTGCCTGGAAACTCGACAAGTGAAGTTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACGCAACTGGAGCGGCACGAGAACACGTTGCTGAGGCAAGAGAACGACAAGCTGAGAGCAGAAAACATGTCCATTAGAGACGCCATGAGGAACCCCATGTGCTCCAATTGCGGTGGTCCAGCCATCATCGGAGAAATTTCGCTTGAGGAACAGCACCTTAGAATTGAAAACGCGCGTTTGAAGGACGAACTCGATCGCGTGTGTGCACTCGCGGGGAAGTTTCTGGGTCGACCCGTTTCCTCTTTGCCGAACTCAAGTTTGGAACTTGGCGTTGGAGGGAATAATAATGGGTTTGGAGCAACGTTGCCTTTGGGACAAGATTTTGCAATGCCTATGAATATGACTATGTCGAATAATGCTTTGGCTATGGTGTCTCCAACGAGTGCTAGGCCAACGGGTGTTGTGGCTGGCTTTGATAGGTCGGTGGAGAGGTCTATGTTTCTTGAACTTGCTTTGGCTGCGATGGATGAGTTGGTGAAGATGGCACAGACTGGGGAGCCTCTTTGGGTGAGGAATGTTGAAGGGGGGAGGGAGATTTTGAACCATGAAGAGTATGTTAGGAGTTTCACTCCTTGCATTGGTTTGAGACCAAATGGGTTTGTGAGTGAGGCCACTAGGGAGAATGGGATGGTCATCATTAACAGTTTGGCACTTGTTGAGACTCTTATGGACTCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTGCGAGAACCTCTACTACTGAGGTGATATCTAATGGAATAAACGGGACAAGGAATGGAGCACTTCAATTAATGCATGCGGAACTTCAAGTTCTTTCACCTTTGGTGCCGGTTCGTGAGGTGAATTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGGGTTTGGGCTGTGGTGGATGTGTCCATAGATAGCATCCGAGAAAGTTCAGGAGCACCCACTTTTGTCAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATATGATGAGAGCCAAGTTCACCAGCTCTATAGACCATTGTTGAGTTCAGGCATGGGGTTTGGTTCCCAACGTTGGGTCGCTACCCTTCAACGTCAATGCGAGTGCCTTGCCATTTTAATGTCCTCAGCAGCACCCTCTAGAGACCATTCCGCAATAACAGCGGGTGGAAGGCGCAGCATGCTGAAGCTAGCGCAACGCATGACGAACAACTTCTGCGCCGGCGTGTGCGCCTCCACCGTGCACAAGTGGAACAAGCTCAGCCCCGGCAACGTCGACGAGGACGTAAGGGTCATGACGCGCAAGAGCCCACCGGGGGTCGTGCTCAGCGCCGCCACCTCCGTCTGGCTCCCCGTCTCCCCCCACCGCCTCTTCCACTTCCTCCGCGACGAGCGCCTCCGCAGCGAGTGGGACATCCTCTCCAACGGTGGCCCCATGCAAGAAATGGCCCACATCGCCAAGGGCCAAGACCATGGCAACTGCGTCTCTCTCTTAAGAGCCAGCGCGATAAATTCCAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATCGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCAGTGGATATTCCAGCCATGCACGTCGTAATGAACGGTGGCGATTCTGCTTACGTGGCCTTATTACCTTCGGGTTTCGCCATTGTCCCCGATGGGCCGGGCTCTCGTGGGCCCACCGCCACAACAAACGGCGCTGATAACGGTGGGGCGCGCGTGAGTGGGTCCCTCCTAACGGTGGCCTTTCAGATCCTTGTCAATAGTCTCCCTACGGCCAAGCTCACGGTAGAGTCCGTGGAAACCGTGAACAACCTCATCTCCTGCACCGTTCAGAAGATCAAAGCCGCGCTCCACTGCGAAAGTTAA 2412 0.5253 MSFGGFLENKSGSGGARNVSDIPYNNDRMPFGAISQPRLVTTTTPTLAKSMFNSPGLSLALQTNIDGQEDVNRMDNFEPNGLRRSREEEHESRSGSDNMDGASGDEHDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLPNSSLELGVGGNNNGFGATLPLGQDFAMPMNMTMSNNALAMVSPTSARPTGVVAGFDRSVERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREILNHEEYVRSFTPCIGLRPNGFVSEATRENGMVIINSLALVETLMDSNRWAEMFPCIIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGSQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSPPGVVLSAATSVWLPVSPHRLFHFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPTATTNGADNGGARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02194 803 SUPERFAMILY Bet v1-like 313 544 - -
Cca01g02194 803 CDD homeodomain 115 173 IPR001356 GO:0003677
Cca01g02194 803 SMART HOX_1 114 177 IPR001356 GO:0003677
Cca01g02194 803 SUPERFAMILY Homeodomain-like 99 173 IPR009057 -
Cca01g02194 803 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Cca01g02194 803 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Cca01g02194 803 Pfam START domain 320 544 IPR002913 GO:0008289
Cca01g02194 803 Coils Coil 167 199 - -
Cca01g02194 803 SMART START_1 320 544 IPR002913 GO:0008289
Cca01g02194 803 Gene3D - 102 189 - -
Cca01g02194 803 MobiDBLite consensus disorder prediction 64 123 - -
Cca01g02194 803 ProSiteProfiles START domain profile. 311 547 IPR002913 GO:0008289
Cca01g02194 803 MobiDBLite consensus disorder prediction 1 21 - -
Cca01g02194 803 CDD START_ArGLABRA2_like 315 543 - -
Cca01g02194 803 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 64 800 - -
Cca01g02194 803 MobiDBLite consensus disorder prediction 71 115 - -
Cca01g02194 803 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 800 IPR042160 -
Cca01g02194 803 SUPERFAMILY Bet v1-like 565 789 - -
Cca01g02194 803 Pfam Homeodomain 116 171 IPR001356 GO:0003677
Cca01g02194 803 Gene3D - 387 538 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02194 Cca-Chr1 50095438 50101360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02194 1 803 Homeobox Transcription Factor Family AT3G61150 65.857 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca01g02194 START 6.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02194 K09338 - gmx:100811873 1456.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02194 01 50095438 50101360 Cca01g02194 01 50095438 50101360 ECH
Cca01g02194 01 50095438 50101360 Cca07g01856 07 45375962 45381815 ECH