Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02188 ATGAGTGACAAATCTTTTATGTTGGTTCAGTCTTTTGAATGGGAGCCTGAATGGATGGCTCCAGAATTTCTTCGTGGAGAACCCTCCAATGAGAAATCTGATGTATACAGTTTTGGAGTTATACTGTGGGAACTTGTGACCATGCAACAACCATGGAGTGGACTTAGTCCTGCCCAGGACGATCATGTGTACCGTCACGTCTCTATGGAGAATTTTGCATCGGTGTCGCTTTTGTGGTTCACCAGAGAGAAGGAATCATGGTTTCTGAAGCGTTGCAGGGAGAGTGGTAACTTGGAGATTGCGTACCGCGAAGGAATGGTTCAATGCTTTAGTTCTTCTGCAACTGTTAGGTTGGGTCTCGAGAATTTGAAAAAGGCGATGCTACAGGGTCACCACGAGGCCAAATACGTTTACTGCATGCTTTTGATGTGTGGTGAAGATGAAGGAGAAAGGAAGGAAGAAAGTGAGATGGCTCAAATTGGCATTGAGTATGTGCTCAAAAACATCCTCACAGTTCGCAAACCTGCACCTCCAGTATTTCCCAAAGGAGAATACGACCTTTTTAGCTTTTTCTGGGATATTGATTATCACACTGCTCTTCATGTTGCCGCGTGTGAGAGATTCACTGAGGTCGTTGAGTATTTGCTCCAGAAAGTTGCCGAAGTTGACGCCAAGGATCGATGGGCAAGCACGTGA 696 0.454 MSDKSFMLVQSFEWEPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQDDHVYRHVSMENFASVSLLWFTREKESWFLKRCRESGNLEIAYREGMVQCFSSSATVRLGLENLKKAMLQGHHEAKYVYCMLLMCGEDEGERKEESEMAQIGIEYVLKNILTVRKPAPPVFPKGEYDLFSFFWDIDYHTALHVAACERFTEVVEYLLQKVAEVDAKDRWAST 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02188 231 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Cca01g02188 231 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 59 - -
Cca01g02188 231 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 5 59 - -
Cca01g02188 231 ProSiteProfiles Ankyrin repeat region circular profile. 195 227 - -
Cca01g02188 231 SUPERFAMILY Protein kinase-like (PK-like) 9 125 IPR011009 -
Cca01g02188 231 SMART ANK_2a 195 224 IPR002110 GO:0005515
Cca01g02188 231 Gene3D - 183 231 IPR036770 -
Cca01g02188 231 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02188 231 Pfam Protein tyrosine and serine/threonine kinase 14 59 IPR001245 GO:0004672|GO:0006468
Cca01g02188 231 Gene3D Transferase(Phosphotransferase) domain 1 2 160 - -
Cca01g02188 231 SUPERFAMILY Ankyrin repeat 192 228 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02188 Cca-Chr1 49962078 49969684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02188 4 59 MAP Kinase Kinase Kinase AT4G24480 73.214 6.49e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca01g02188 PK_Tyr_Ser-Thr 4.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02188 - - gmx:102666234 134.806