Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02178 ATGGTGGAAGCTACTAAAGACATGGTAGCAGTTGATGCCTGTTCTACAGAAGACTGCTTGTTGCACGCACAGGAACTTGTTCCTGTTGCTCTTGCTAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCGACCCGTTTATCGGACTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTATGTAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAAAGAGGCCATTGAATTGGCCGAGTTGTGTGTGAAGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCTTTAACTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACTGGTGTGCTCGGTGAAGCTACTTTGCCATTAACTGTGTTAGGTTCTATGGCAGAATCAGATATAGAAACACACAACAATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTGGACAGACTCTATGATATTATGAAAGAAGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCACGGATAAGGGAGAAGACAGTTACTGTGATATGCTCTCTTGTGGAATCGGGAAGCTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGACTTGTTGAATCTGGTAGTGCTGTTGGTAAAGAGAAGGCTACGGTATCTCTTCAGAGATTGTCAATGTCGGCGGAAACAACCCGCGCGATTGTTGGACATGGTGGTGTTCGGCCCTTGATTGAGCTTTGTCAAAGTGGTGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACAAATATATCAGCTGTTCCGGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTGAGGGTTATGATCAATCTTCTTAGTTGTGGAATTTTATTGGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTTCAAGCAATGAGAATCTTAGAAGGTCTGTTATATCAGAAGGTGGTGTTAGGAGTCTTTTGGCCTACCTTGATGGTCCACTTCCCCAAGAATCTGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTGTCTGAAGAAACTTTGGTTTCTCTTGGTTTGCTTCCCCGTTTGATTCATGTCCTGAAGTCTGGATCGCCGGGTGCGCAACAAGCGGCTGTGTCAGTCATCTGCCGAGTTTGCAGCTCAATGGAGATGAAAAAATTGATTGGCGAAGCTGGGTGCATCCCTCTTCTTATTAAGATGCTTGAGGCTAAAGCAAATGCTGCTAGAGAGGTTGCTGCTCAAGCAATTTCGAGCCTAATGGTTCTGTCGCAGAATCGGAGAGAAGTTAAGAAGGATGATAAGAGTGTGCCAAATCTGGTCCAGTTGCTTGATCCAAGCCCTCAGAATAGTGCAAAAAAATATGCAGTTTCTTGCCTTGGATCACTTTCTCCTAGTAAGAAATGTAAGAAACTAATGATTTCTTATGGGGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAGAAAGCTTCTGGAGCGGTTGGAAAGAGGGAAATTGAAAAGCTTGTTCAGCAGAAAGTAG 1683 0.448 MVEATKDMVAVDACSTEDCLLHAQELVPVALAKAREVKGFPGRWKMIISKLEQIPTRLSDLSSHPCFSKNALCKEQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIETHNNIRELLARLQIGHLEAKHKALDRLYDIMKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVGKEKATVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLTNISAVPEVRQALAEEGIVRVMINLLSCGILLGSKEYAAECLQNLTSSNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLIHVLKSGSPGAQQAAVSVICRVCSSMEMKKLIGEAGCIPLLIKMLEAKANAAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNSAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIPGARKLLERLERGKLKSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02178 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Cca01g02178 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 560 - -
Cca01g02178 560 Gene3D - 334 545 IPR011989 -
Cca01g02178 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
Cca01g02178 560 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 560 - -
Cca01g02178 560 Gene3D - 146 333 IPR011989 -
Cca01g02178 560 SMART arm_5 471 513 IPR000225 GO:0005515
Cca01g02178 560 SMART arm_5 390 429 IPR000225 GO:0005515
Cca01g02178 560 SMART arm_5 350 389 IPR000225 GO:0005515
Cca01g02178 560 SMART arm_5 308 349 IPR000225 GO:0005515
Cca01g02178 560 SMART arm_5 185 225 IPR000225 GO:0005515
Cca01g02178 560 SMART arm_5 430 470 IPR000225 GO:0005515
Cca01g02178 560 SMART arm_5 267 307 IPR000225 GO:0005515
Cca01g02178 560 SUPERFAMILY ARM repeat 156 542 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02178 Cca-Chr1 49719388 49722965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02178 400 538 U-box Gene Family AT3G54790 29.496 1.43e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02178 - - gmx:100809488 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02178 01 49719388 49722965 Cca01g02178 01 49719388 49722965 ECH