Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02177 ATGAGGCCTGTTTTCTGCGGAAACCTGGATTTTGACGCGCGTCAATCTGACGTCGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTTGACATGAAATCCGGGTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCCATAAGAAGGCTAGATAGAACGGAATTTGGTAGAAAGGGACGTCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGATGCCAAAAAATCTTCATCTAATTCAAGACCATCCAAGACTTTGTTTGTTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATCTCGAGAGACATTTTGATGTCTACGGGAAAATTTTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAAACCCAGGAGGATGCTACAAAAGCTTTGGAATCGACCAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGTCATGACTCTCCTGATGGGAGATACGGTCGTGGTAGATCCCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCGAAGTATGAACGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCTCGAGATAGGTCGCGATCCTGA 756 0.4458 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDAKKSSSNSRPSKTLFVINFDPVHTRTRDLERHFDVYGKILNIRIRRNFAFIQYETQEDATKALESTNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02177 251 MobiDBLite consensus disorder prediction 222 251 - -
Cca01g02177 251 MobiDBLite consensus disorder prediction 73 92 - -
Cca01g02177 251 MobiDBLite consensus disorder prediction 169 191 - -
Cca01g02177 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 213 - -
Cca01g02177 251 PANTHER - 4 213 - -
Cca01g02177 251 Gene3D - 77 224 IPR012677 -
Cca01g02177 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Cca01g02177 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Cca01g02177 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Cca01g02177 251 MobiDBLite consensus disorder prediction 169 251 - -
Cca01g02177 251 Gene3D - 1 76 IPR012677 -
Cca01g02177 251 SUPERFAMILY RNA-binding domain, RBD 86 175 IPR035979 GO:0003676
Cca01g02177 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Cca01g02177 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Cca01g02177 251 SMART rrm1_1 96 162 IPR000504 GO:0003723
Cca01g02177 251 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02177 Cca-Chr1 49709949 49712947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02177 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 2.96e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02177 K12893 - gmx:100797778 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02177 01 49709949 49712947 Cca01g02177 01 49709949 49712947 ECH