Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02176 ATGGCAGGATCCGAAGCCACGAACTACgcttctgcttctgcttctgctacaactactgctACAAACAACGTGGCCAGATCGAACAAACCAACAACCATGATCAGAAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACTCTTCTCAGCATGTTAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGAGGCTGCTAGGGCTTATGATGAAGCAGCAAGGGCTCTGAGAGGTGAAAATGCCCGAACCAACTTTGCAATACCACTTAGCCAAGCTAACATACCAAATGGTTCTGATGGGAAACATGGTTTGAGCTTTGCTTCATTGAAGGCCAAGCTGAGCAAGAATCTTCAGAACATCATGGCTAGGGCAAGTGACCACAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACCTTTGCCAGCATCTTCCACCGCAGAAGCTACCAAATCCCTCAAGGGGACATGAGGAACATTGAGAAGGTGGTGCAGCCTAGTGTTATTGTGCCTCCTATGGACGGTGCTGCTGCTGCTAATAACTGGGAAAGTGCTTCTAGCGTTTCTGATTACAGCTCAGAGTGGGTCGGGTTCGGAAAAATCGGGTTGGAATCGGACGGGTCCGAAGTTGGGGAAGCTAGTGTTGGTGATCAAGGGTTTTTGGAGCAACTCATGGGGTGGGTTGAAAGCCCTGATGCTAGTGAAAGTGAGTGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCACCAACTTTCACTGGCTCTCCTTATGATTGTGGATCCCCTTATAGTGGCTATGCCTCTCCTTATAATAACGGTTCTGCCTCTCCTTATAATAGTGGTTATGCCTCTCCTTATAATAACGGTTGTGTATCCCCTTGTAATGGTTATGCTTCTCCATATTACAATAAGAAGGTTTCTATCGCAAACCCTCCCTCCCTCCGACCAGGTCGCGCGCGAAGGGGGTTTTAA 1005 0.4697 MAGSEATNYASASASATTTATNNVARSNKPTTMIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAIPLSQANIPNGSDGKHGLSFASLKAKLSKNLQNIMARASDHNKSSKSRVSDHFTFASIFHRRSYQIPQGDMRNIEKVVQPSVIVPPMDGAAAANNWESASSVSDYSSEWVGFGKIGLESDGSEVGEASVGDQGFLEQLMGWVESPDASESECSRSKRFKVSSSVLVPPTFTGSPYDCGSPYSGYASPYNNGSASPYNSGYASPYNNGCVSPCNGYASPYYNKKVSIANPPSLRPGRARRGF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02176 334 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Cca01g02176 334 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Cca01g02176 334 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cca01g02176 334 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Cca01g02176 334 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 249 - -
Cca01g02176 334 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Cca01g02176 334 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Cca01g02176 334 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Cca01g02176 334 MobiDBLite consensus disorder prediction 1 28 - -
Cca01g02176 334 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Cca01g02176 334 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02176 Cca-Chr1 49706056 49709924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02176 36 93 AP2-EREBP Transcription Factor Family AT5G19790 74.138 1.03e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g02176 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02176 K09286 - gmx:100799444 470.7