Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02173 ATGGGTTCTGGTACCAATTTGGTGACTACTATAATTGGGTTTGGGTTGAGTGCAACTTTCATTGTGTTTGTTTGCACCAGAATAATTTGTGGAAGACTACGAGAGCGTGTGGGATCAAGGACTATATATGAAATTGAAACAAGAAGTGATATAGAACGGGCAGAATATCACGGTAATGACCCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTTGAATTTCAACCAAGAAGCCTTCAGTAACTTTGAAAGTACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAACTATTGCGTATCATACCAAAATGTGGCCACAGTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCCACGTGTCCAGTGTGCCGTTTGTCACTACAGAATGCTAATGAAGCAAAACATGTGAGACATGTACCATTTACTATTAGGCAATCTCTTGATGAGTCCCACTCCAATACTTCTTCAGAAAGGATCACAGATAATGAGATGGAAGTTGAACATAATGCTAGTAACTCCCCACAATCAACTTTGGAAGAACCAGACACCAGACACTGA 573 0.4014 MGSGTNLVTTIIGFGLSATFIVFVCTRIICGRLRERVGSRTIYEIETRSDIERAEYHGNDPEPAFVAAIPTLNFNQEAFSNFESTQCVICLAEYKEKELLRIIPKCGHSFHLSCIDMWLRKQSTCPVCRLSLQNANEAKHVRHVPFTIRQSLDESHSNTSSERITDNEMEVEHNASNSPQSTLEEPDTRH 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02173 190 MobiDBLite consensus disorder prediction 149 190 - -
Cca01g02173 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Cca01g02173 190 CDD RING-H2_EL5_like 86 129 - -
Cca01g02173 190 SUPERFAMILY RING/U-box 78 135 - -
Cca01g02173 190 SMART ring_2 87 128 IPR001841 -
Cca01g02173 190 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Cca01g02173 190 Pfam Ring finger domain 86 129 IPR001841 -
Cca01g02173 190 PANTHER OS11G0150450 PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02173 Cca-Chr1 49678724 49680246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02173 34 129 C3H Transcription Factor Family AT1G20823 35.417 2.34e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02173 - - gmx:100810553 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02173 01 49678724 49680246 Cca01g02173 01 49678724 49680246 ECH