Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02172 ATGGGATTCATGCGATTAGTGCCGCAAAAGAAGTTAGAGTCTTCTCAAGTACCAGAAGAGGAACAGCTCAATCTATTGAAGGATTTAGAGCGCAAGGAAACTGAGTATATACGGGTCACAATGTATATACAAGTGTTAGACACATTGACATCATCAAAAGAGCTCGTTGACCTTTTGAAGACTGTGGATTCCCTTTTCCATTCCATACAAGCTGGATCAAGCAAGCCAATGTTGAATAACTTGTACAGATATGTTCCTACTATCCGTGAACAGTTGCAGgatgaagggagtggacatgacatgccaacaccacaaggaagatctttattagataTATACCATTGTCTACCAAATCCACATCCTTCACTACCAAATTCAAGCTCTATTAGATTTGAAATGGACAAAGAGACTGCAAGAATGACTGAACAAATTGGTGGGAGCATGACAACATCGACATGCATATATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGCAAATTTTTGCACACAAAAATACCATTATCATTTCATCAGTATAACTCAAACACAACATTGATTAAAAAGAGTGAAGGAGACGACACAAGTGTGCAAAATATTGTTAAGGAGGATAATCCAAGACCAATAAGATTAATTTGGTGGACAGTACCTCCCCAGAATTTTATCAAGATTAATTGTGACGGAGCATTCACTAGCCATGGAAATAAAGCTGCTGCAGGAGGGGTTGTGAGGAATTGGGAGGGTAGATTTATATTTGCATTTGCTAGTGCATTAGAAAATTGTTCAATTGTAGAGGCTGAATTATGGGCAATTAAAATTGGGATGGAAGAAGCTATATCCAGAAGGTTCTTAAATTTAATCGTTGAAAATGATTCCTATTCAGCTATTGAGCTAGTTAATCGTGGTGTTCAAAAAAGTCACCCTTACTATGCTCTTGTCTCTTCGATCATCGAAATGCGTAGTAAGGTTCATCAGATTTGTTGTAACCATGTGTTTAGAGAAACTAATTCAGTAGCAGACAGTCTTGCCAAATATGGACTATCATTGTATCCTAATTTATCTGTCGAACTTTTTGAATCTCCTCCTTCATTCATTATGATCCCTATGTGGAGGGATAATTCTGGGATAATATACTCTCGATAG 1143 0.3587 MGFMRLVPQKKLESSQVPEEEQLNLLKDLERKETEYIRVTMYIQVLDTLTSSKELVDLLKTVDSLFHSIQAGSSKPMLNNLYRYVPTIREQLQDEGSGHDMPTPQGRSLLDIYHCLPNPHPSLPNSSSIRFEMDKETARMTEQIGGSMTTSTCIYWLAGRCNRNPCKFLHTKIPLSFHQYNSNTTLIKKSEGDDTSVQNIVKEDNPRPIRLIWWTVPPQNFIKINCDGAFTSHGNKAAAGGVVRNWEGRFIFAFASALENCSIVEAELWAIKIGMEEAISRRFLNLIVENDSYSAIELVNRGVQKSHPYYALVSSIIEMRSKVHQICCNHVFRETNSVADSLAKYGLSLYPNLSVELFESPPSFIMIPMWRDNSGIIYSR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02172 380 Pfam Reverse transcriptase-like 225 345 IPR002156 GO:0003676|GO:0004523
Cca01g02172 380 SUPERFAMILY Ribonuclease H-like 220 352 IPR012337 -
Cca01g02172 380 Gene3D - 221 348 IPR036397 GO:0003676
Cca01g02172 380 ProSiteProfiles Zinc finger C3H1-type profile. 147 173 IPR000571 GO:0046872
Cca01g02172 380 PANTHER OS05G0353850 PROTEIN 205 364 - -
Cca01g02172 380 CDD RNase_H_like 224 344 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02172 Cca-Chr1 49659011 49665997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02172 214 344 Glycoside Hydrolase AT2G33160 27.820 5.66e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca01g02172 RVT_3 2.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02172 - - pvu:PHAVU_006G058500g 195.667