Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02170 ATGGACTATATCAAGTTCCAGACAGTTGATTTGAGCAAGTACATTTGTCCAATACCGGGGGTGAAAGTTTTGGTTGTAGATGCCAACCTAACATTTCTAGCTGCTGTATCAAAAATGCTTCATAGCCTTGGATATGAAGTTGTGACTGCTTCACTAGCTTCTGAAGCTTTATCAATTGTTGAGGAGAAGAAGAACGAGCTTAACCTTGTGTTTTTGGAGGTTCACTTGCCTGACATGGACATAAATGCCCTCACAGGGAAAATAAGAGAAATCTCTGATGTGCCATATTTTCTTATGACTGCTGATGATGATCTGTTTAACTTATTACAAGAACTGTGCAATGGGTCTATACCGTGTTTCAAAAAGCCAATTAAGATTTCTGATCTAAGTGGCATGTGGAAATATGCAATGTGGAAAAAAGATGGAAGAATAGCGAGTGAAAATATAAGAGGCTCTGGGCGGCTTCCCGTGGAGGAAAGTATTGTAAACAACAGTCAAGAGCGGCATCCATTTGTGAACACAGGACGGCTGATACCCCAGAGTTCAAAAAGGAAAGCACAAGGACTTAAAATAGGGGGAGAACAAAGTGAATCATTAGTGCCGAAAAGGAAAAGGCTTAGTTGGCGTAATGTTTCACGTACAAAGTTCTTGGGAGCTGCTGTTGATTTAGCAGGAATCAATGCTACTCCAAATCAAAGACACCGGCTTAAGAATGTACTAGGACCTAAAAAGGGGACCTCTACAAACTATTCACAGAGATCTCGTCGATCTTCGAAGAAAACTAATCCTATTAAACAGCACAGCGATTATAAAGGACACAGGCCTCAATTGCATAACCATAAGTTTTGTATCTGTAATTGCATGTATCTGCATTCTCTGCGCACTCAAACGCCGAACCTTGCATCGTTATTTTCAACTACGTGGACTTTGGAGGAAGATGCATTGTATCGACCGCTGGAACAGCTTGGTGTAGCATACTACACATCTGGCTCTGGTGATTTCATGAACAATGGTAATGGGAGTGCAGACATCAGCCAGGTTGAAAATGCTGCTGATGGAAAAGTTTTCAACGAGGACGCATGTGTCTACCATGTGAATGATCTTGCTGTGCAAACTGAAATGGATTTTTCAACACTGCTAGCCAATGACATGAGCCAAGAATTTCCCCCACTACTTCCTGTTCCTCTACTAACATCAGATGAGGAACATGGCAATTCTGGGGCTGAAGCAGCAAAGATTGATGAAACTTTTTATGCTCTAAATGGAACTCAGAAGTTTAGCGATGAGGATTTAAAGATCTGGTTATCAAGTGGACTACAAAATGATGCTGTTGCTTGA 1338 0.4126 MDYIKFQTVDLSKYICPIPGVKVLVVDANLTFLAAVSKMLHSLGYEVVTASLASEALSIVEEKKNELNLVFLEVHLPDMDINALTGKIREISDVPYFLMTADDDLFNLLQELCNGSIPCFKKPIKISDLSGMWKYAMWKKDGRIASENIRGSGRLPVEESIVNNSQERHPFVNTGRLIPQSSKRKAQGLKIGGEQSESLVPKRKRLSWRNVSRTKFLGAAVDLAGINATPNQRHRLKNVLGPKKGTSTNYSQRSRRSSKKTNPIKQHSDYKGHRPQLHNHKFCICNCMYLHSLRTQTPNLASLFSTTWTLEEDALYRPLEQLGVAYYTSGSGDFMNNGNGSADISQVENAADGKVFNEDACVYHVNDLAVQTEMDFSTLLANDMSQEFPPLLPVPLLTSDEEHGNSGAEAAKIDETFYALNGTQKFSDEDLKIWLSSGLQNDAVA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02170 445 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Cca01g02170 445 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 436 IPR045279 GO:0009736
Cca01g02170 445 MobiDBLite consensus disorder prediction 232 273 - -
Cca01g02170 445 Gene3D - 21 147 - -
Cca01g02170 445 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Cca01g02170 445 MobiDBLite consensus disorder prediction 242 257 - -
Cca01g02170 445 SUPERFAMILY CheY-like 19 137 IPR011006 -
Cca01g02170 445 SMART REC_2 21 133 IPR001789 GO:0000160
Cca01g02170 445 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR16 22 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02170 Cca-Chr1 49633510 49636994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02170 17 246 Response Regulator Gene Family AT4G16110 27.004 5.25e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca01g02170 Response_reg 7.8e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02170 - - gmx:100801594 434.491