Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02163 ATGGCCGATGAAGCTTCTAGAGACGTTGATCTAAGGCTGGGGGAGCCCAAGGGCCCAAAACAGGAGCCAGACACGGAGGAAGCCTCAGGTTCGGCCATACGTGTgatgccggtggctgtgcacgtaccggcggggatgtcgaaggccctggcccaggcccaaacccagaagcgggcctcaaccaaggaccgccacactaaagtagaaggccgaggcaggaggatccgaatgcccgcgacgtgcgcggcgcggatcttccaactgacccgagagctgggccacaagtccgacggagaaaccatccggtggctcctcgaacacgcggagccggccatcatcgccgccacgggcaccggcaccgtcccCGCCATCGCCATGTCCGTGAACGGCACGCTCAAGATCCCCACCCCCTCCCCTTCCAACCCCGACCCCGAAGACCCGCCCGAGAGAAAGAAACGCAAACGACCCGCGAATAGCGCCTACGTCGACGTAAACGACGCCGCCGTTTCCCTCTCCGCGGGCCTCGCCACCTCcaataaccaacacgcaacaacaacgacaacaacgacaacCTCGGTTCCTCAACACAACGTTATTCCGCTGCCGCAAGGCATGGTCCCCGTGTGGGCCATACCTTCAAACGCGGTAGTTCCAACCGCGGGTGCCTTCTTCGTTGTTCCTCAAACGCCGTCGTTTCAGCACCAGCCACAGTTCTTCACCATAGCCAGACCTATCTCCGCTTTCGTCTCTTCCATGGTTACTCCAATTCAACTCCAATCAACCTCAACCTCTTCAACCATCGATAACAGTAACACCTCCTCCACCGCGCCATCTTCCAAATCGCCGGCGAGAGCCGCCGTCATGACTCCGGCCACCGCCTCCGCCaccactactaccactaccgctacaacaacaacaacaacGCAGATGCTGAGAGATTTTTCTTTGAAAATTTACGACAAGCAAGAGTTGCAGTTCATGTCGCGGGCTTCTTCCAAGCATTGA 1005 0.3811 MADEASRDVDLRLGEPKGPKQEPDTEEASGSAIRVMPVAVHVPAGMSKALAQAQTQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTPSPSNPDPEDPPERKKRKRPANSAYVDVNDAAVSLSAGLATSNNQHATTTTTTTTSVPQHNVIPLPQGMVPVWAIPSNAVVPTAGAFFVVPQTPSFQHQPQFFTIARPISAFVSSMVTPIQLQSTSTSSTIDNSNTSSTAPSSKSPARAAVMTPATASATTTTTTATTTTTTQMLRDFSLKIYDKQELQFMSRASSKH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02163 334 MobiDBLite consensus disorder prediction 1 24 - -
Cca01g02163 334 MobiDBLite consensus disorder prediction 261 282 - -
Cca01g02163 334 MobiDBLite consensus disorder prediction 290 304 - -
Cca01g02163 334 MobiDBLite consensus disorder prediction 144 159 - -
Cca01g02163 334 PANTHER TRANSCRIPTION FACTOR TCP9 19 334 - -
Cca01g02163 334 MobiDBLite consensus disorder prediction 261 304 - -
Cca01g02163 334 Pfam TCP family transcription factor 60 173 IPR017887 -
Cca01g02163 334 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 334 IPR005333 GO:0003700
Cca01g02163 334 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g02163 334 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Cca01g02163 334 MobiDBLite consensus disorder prediction 130 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02163 Cca-Chr1 49566429 49568091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02163 57 328 TCP Transcription Factor Family AT2G45680 56.401 1.39e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca01g02163 TCP 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02163 - - gmx:100804760 469.159