Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02161 ATGGACAATTATGGGTCTTCACAGAATCCATATGGATATGGGCATCCAAACCCTTACATGTATCCTGGCAACACCCCTTCATACCCTCCTCATGATCCATATGCACCTTCACCATATCAATATCCACCAAATCCTCCATATTCCAACGACTACTCCTACCCTCCACCACCTCCACCACACTCCTCAATCCCTTATTCTAGCCACATAGACTATGCATACCCCCCACCACCTCCTCCAACCACCACATCACATGGTTACTTTGACTTTcctcagcctcaacctcagcctcaacctcagcctcagcctcagccACCTTATACTTATCCTTACCCTCATCAGTTCCCTCAAGAATGGAGTGTCACAGGAGGTGGAGTGTCTCACACTAGTGATGATTATAACCCTCCTCACTCATCTGCTTACCCTCCTTTGGATGATCTCATGAGCAATGTTAGAATTTCTGATAATAACCTTCCAAGTGCACCTCCATTGGCACATTCAATTTCAATAGATAAGAGAGATGAGTTTCATGGTTATTCTAGCTATCCCTCCTCGGGTTTGGATCAGGTGGATTCTTCTAATCTTTCCGCTCATTCTGATGACTCGGTGCGTAGTCATAGCTGGCAGATTGTGCCAGCTCAGAGCAAAGGGTCTCTGAGGGTTTTGCTCCTGCATGGGAGTTTAGATATTTGGGTTTATGGAGCCAAACACCTTCCAAACATGGACATGTTCCACAAAACTTTGGGGGATATGTTTGGTAAATTGCCTGTTAATGTGAGCAACAAGATTGAAGGAACTGTGAGCCGGAAGATTACTAGTGATCCTTATGTGTCAATTACTGTGTCAAATGCTGTGATCGGGAGGACTTTTGTGATTAGCAATAGTGAGAATCCGGTTTGGGAGCAACATTTCTATGTTCCTGTTGCACATCATGCTGCTGAAGTTCACTTTGTTGTAAAGGACAGCGATGTGGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCTGTGGAGCAAATATACTCAGGGGAAAAGGTACAAGGGAACTACCCTATCCTGAATAGCAATGGGAAGCCTTGTAAGCCAGGTGCCGTCTTGAGTGTATCCATTCAGTACATTCCTATGGAAAAACTTATCATTTATCATCAAGGAGTTGGAGCTGGCCCTGACTACATTGGTGTTCCTGGCACATATTTTCCATTGAGGAAAGGTGGAACCGTTACTCTATATCAAGACGCTCATGTTCCAGATGGTTGCCTCCCTAATGTTGTGCTTGACCATGGCATGTATTATGCTCATGGAAAGTGTTGGCTGGACATCTTTCATGCCATAGAACAAGCACAGCGATTGGTTTACATTACGGGGTGGTCAGTGTGGCACAAAGTTAGGTTGGTAAGGGATGCTGGCCAAGCATCAAATTACACCCTAGGTGATCTTCTGAGGTCTAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTGTTTGGGATGACCCTACATCAAGAAGCATTCTCGGTTACAAAATGGATGGTGTAATGGCAACTCATGATGAGGAAACTAGACGTTTTTTTAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCTCGCATTGCTGGAAAACGACATAGCTGGGCCAAACAAAAGGAAGTTGGAACAATTTATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAAAAGAAAAATTGTAGCGTTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCCACCATCCTCTCTTTAGGACACTGCAGACATTGCATAAGGATGACTATCACAACCCTACTTTCACGGGCAATACTGGTGGTTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTACGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTAAAGGTATTAAAAAGTTGAAGAGTTCATACGATGATGCATTGCTTAAGCTAGACAGAATCCGAGATATTATCAGTGCATCTAATGCTGCTAGTGTTGTTGATGATAATCCTGAATCATGGCATGTTCAGATATTCCGTTCAATAGATTCAAATTCTGTCAAGGGATTTCCAAAAGAGCCAAAAGATGCATCAAGCATGAATCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATCGGGTCTTCATATAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCGCTGAAGATTGCTGCAAAGATAAGGGCAAATGAGAGATTTGCAGTGTACATTGTCATTCCAATGTGGCCAGAGGGTGTTCCAACAGGTGCTGCTACCCAAAGAATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGGGAGGCCATAGATATGTATGAGAATATCACAGTGTCTGGAAATCCTCCGCCAGCAAATAGTCCACAAGCAATTAGTAGAAACAATCGACGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTCATATTGGGGTCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCGATGGGAGCCTACCAACCTAATCATACCTGGGCAAGAAGACGGTCTTTTCCACGTGGACAGGTAAGATTTTCTAAAGTGGATGGCTTCTCACATATTTACATAAGAAGAGCCGTTGATTGA 2886 0.4217 MDNYGSSQNPYGYGHPNPYMYPGNTPSYPPHDPYAPSPYQYPPNPPYSNDYSYPPPPPPHSSIPYSSHIDYAYPPPPPPTTTSHGYFDFPQPQPQPQPQPQPQPPYTYPYPHQFPQEWSVTGGGVSHTSDDYNPPHSSAYPPLDDLMSNVRISDNNLPSAPPLAHSISIDKRDEFHGYSSYPSSGLDQVDSSNLSAHSDDSVRSHSWQIVPAQSKGSLRVLLLHGSLDIWVYGAKHLPNMDMFHKTLGDMFGKLPVNVSNKIEGTVSRKITSDPYVSITVSNAVIGRTFVISNSENPVWEQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEKVQGNYPILNSNGKPCKPGAVLSVSIQYIPMEKLIIYHQGVGAGPDYIGVPGTYFPLRKGGTVTLYQDAHVPDGCLPNVVLDHGMYYAHGKCWLDIFHAIEQAQRLVYITGWSVWHKVRLVRDAGQASNYTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGNNKRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGIKKLKSSYDDALLKLDRIRDIISASNAASVVDDNPESWHVQIFRSIDSNSVKGFPKEPKDASSMNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAIDMYENITVSGNPPPANSPQAISRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPNHTWARRRSFPRGQVRFSKVDGFSHIYIRRAVD 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02161 961 CDD C2_plant_PLD 220 372 - -
Cca01g02161 961 MobiDBLite consensus disorder prediction 91 111 - -
Cca01g02161 961 Gene3D C2 domain 220 359 IPR035892 -
Cca01g02161 961 Gene3D Endonuclease Chain A 694 947 - -
Cca01g02161 961 SUPERFAMILY Phospholipase D/nuclease 432 649 - -
Cca01g02161 961 Pfam Phospholipase D Active site motif 886 912 IPR001736 GO:0003824
Cca01g02161 961 Pfam Phospholipase D Active site motif 551 585 IPR001736 GO:0003824
Cca01g02161 961 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 885 912 IPR001736 GO:0003824
Cca01g02161 961 PANTHER PHOSPHOLIPASE D ALPHA 1 139 944 - -
Cca01g02161 961 MobiDBLite consensus disorder prediction 119 135 - -
Cca01g02161 961 SMART C2_3c 226 348 IPR000008 -
Cca01g02161 961 Pfam C2 domain 225 351 IPR000008 -
Cca01g02161 961 ProSiteProfiles C2 domain profile. 207 349 IPR000008 -
Cca01g02161 961 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 223 373 IPR035892 -
Cca01g02161 961 MobiDBLite consensus disorder prediction 1 164 - -
Cca01g02161 961 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 550 585 IPR001736 GO:0003824
Cca01g02161 961 Gene3D Endonuclease Chain A 428 670 - -
Cca01g02161 961 SMART pld_4 550 585 IPR001736 GO:0003824
Cca01g02161 961 SMART pld_4 885 912 IPR001736 GO:0003824
Cca01g02161 961 PANTHER PHOSPHOLIPASE D 139 944 IPR015679 -
Cca01g02161 961 SUPERFAMILY Phospholipase D/nuclease 675 930 - -
Cca01g02161 961 MobiDBLite consensus disorder prediction 22 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02161 Cca-Chr1 49535975 49545807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02161 60 943 Phospholipase D Gene Family (Wang group) AT2G42010 69.247 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02161 K01115 - gmx:100805294 1578.53