Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02160 ATGAATTCCCCAATAAACATTACTCAGTACTCGATTCGGGGGAAAAATGAAAGCTATTGGCATCATCCTTCATTCCCCATATCTTGTGCTAAACTCAGCATAGGCAACATGATCTTCAGGACACTCCTACTATTCCTGGCCTTTATGGTGGCAAATTCAGTTGCTGTCATGGACAAGCAGACATACATAATACACATGGACAAGGCCAAGATCAAAGCATCAGTCCATTCCCAAGACAACACAAAACCTTGGTTCAAATCAGTCATTGACTTCATCTCTGAAGCTTCATTGGAAGAAGAGATATCCCCTCAGCTTCTTTATGTTTATGAAACCACCCTGTTTGGTTTTGCTTCTCAACTTTCAAATAAACAGCTAGAGTACTTGAACCAAGTGGAAGGTTTCCTTTCAGCCATACCTGATGAACTATTAGCCCTTcacacaacttacagccctcattttcttggcctacagaatggaagaggactttggaatgcttccaacttggcctcagatgtgatcattggtgtccttgacacaggaatatggccTGAACACATAAGTTTCCAAGACACAGGTTTGTCCAAAGTACCCTCTCACTGGAAAGGTGCTTGTGAAGCAGGCACCAACTTCTCTGCCTCAAATTGCAACAAGAAGCTTATTGGTGCTAGAGTCTTTCTCAAAGGGTATGAAAAATTTGTTGGAAGAATCAATGAGACATTGGACTATCGTTCTGCTAGAGATGCTCAAGGACATGGAACACACACAGCCTCAACTGCAGCTGGAAACATGGTGAGTGATGCCGGCTTTTTCGGCTTGGCTCGAGGTTCTGCCAGTGGAATGAGGTACACCTCAAGAATAGCTGCTTATAAAGTATGCTGGCGTTTAGGCTGCGCAAACTCTGACATATTGGCAGCTATTGATCAAGCTGTGGCCGATGGTGTTGATGTATTGTCACTCTCTTTAGGAGGCACTGCCAAGGCTTTTTACAATGATAGCATTGCCATAGCCTCATTTGGAGCAACACAAAAAGGAGTTTTTGTTTCTTGCTCAGCAGGCAATTCAGGACCCTCTAGTTCAACTGTTGGAAATGTTGCACCATGGATCATGACTGTTGCTGCTAGCTACCTTGACAGAAGCTTTCCAACACAAGTGAAGCTAGGCAATGGACATGTTTTCAAAGGGTCATCATTGTACAAGGGCAAGCAAGCACACCAATTGCCTCTTGTGTATGGAAACTCCTCAAAAGCACAAAGGACAGCACAGTATTGCACCAAAGGTTCACTTGATCCAATGTTCGTCAAGGGAAAAATAGTTGCATGTGAAAGAGGAATAAATAGTAGAACGTCAAAGGGAGAGGAAGTGAAAATGGCAGGTGGAGCAGGAATGATATTACTCAACTCAGAAAACCAAGGAGAAGAGCTTTTTGCTGACCCTCATGTTTTGCCAGCCACATCCTTAGGGGCCTCAGCAAGTAAAACAATTAGAAGCTACATTCACTCAGCAAAAACACCACCAACAGCTTCAATTTCCTTCCTAGGGACAACGTATGGAGACCCTGCACCAATTATGGCAGCATTTTCCTCTAGAGGACCAAGTTCTGTGGGACCAGATGTAATCAAGCCAGACGTAACTGCACCTGGTGTGAACATCTTGGCTGCATGGCCTCCCACGACTAGTCCAAGCATGCTCAAGAGTGACAAAAGAAGTGTACTATTCAACATAGTTTCAGGCACCTCAATGTCATGTCCTCATGTTAGTGGCATAGCTGCACTGATCAAATCTGTGCATAAGGATTGGTCACCTGCAGCCATCAAATCTGCTCTCATGACTACTGCTTACACATCAAACAACAAGGCTGCCCCAATTACCGACATTGGTTCAAACAATTCAGCATTTGCTGACCCCTTTGCTTTTGGCTCAGGCCATGTTAGCCCTGAAAGAGCTTCTGATccagggctaatctatgacatcacctccaaagattacttaaactacttgtgCAGCCTGAAATACACATCCTCCCAGATTGCTATATTGTCAAAAGGTAATTTCAAATGTGCCAAAAACTCAGGTCTAAAGGCTGGTGACTTGAACTACCCTTCATTTTCTGTGCTATTTGACACTAGTGCTTTAAAGGCTAGTGTGACATACAAGAGGGTAGTCACAAATGTTGGGTACTCGACAAGTTCTTATGCAGTGAAAGTGGAAAAACCAAAGGGAGTATCTGTCACGGTTGAACCAAGGAATTTGAGATTCAGAAGAATGGGTGAGAAATTGAGTTATAAAGTGACTTTTGTTTCAAATGGGAAAACAGGAGTCAGTGGCAGTTCATCATTTGGATCACTTACTTGGACATCAGATAAATATGCTGTTAGAAGTCCTATAGCAGTAACCTGGCAATAA 2403 0.4028 MNSPINITQYSIRGKNESYWHHPSFPISCAKLSIGNMIFRTLLLFLAFMVANSVAVMDKQTYIIHMDKAKIKASVHSQDNTKPWFKSVIDFISEASLEEEISPQLLYVYETTLFGFASQLSNKQLEYLNQVEGFLSAIPDELLALHTTYSPHFLGLQNGRGLWNASNLASDVIIGVLDTGIWPEHISFQDTGLSKVPSHWKGACEAGTNFSASNCNKKLIGARVFLKGYEKFVGRINETLDYRSARDAQGHGTHTASTAAGNMVSDAGFFGLARGSASGMRYTSRIAAYKVCWRLGCANSDILAAIDQAVADGVDVLSLSLGGTAKAFYNDSIAIASFGATQKGVFVSCSAGNSGPSSSTVGNVAPWIMTVAASYLDRSFPTQVKLGNGHVFKGSSLYKGKQAHQLPLVYGNSSKAQRTAQYCTKGSLDPMFVKGKIVACERGINSRTSKGEEVKMAGGAGMILLNSENQGEELFADPHVLPATSLGASASKTIRSYIHSAKTPPTASISFLGTTYGDPAPIMAAFSSRGPSSVGPDVIKPDVTAPGVNILAAWPPTTSPSMLKSDKRSVLFNIVSGTSMSCPHVSGIAALIKSVHKDWSPAAIKSALMTTAYTSNNKAAPITDIGSNNSAFADPFAFGSGHVSPERASDPGLIYDITSKDYLNYLCSLKYTSSQIAILSKGNFKCAKNSGLKAGDLNYPSFSVLFDTSALKASVTYKRVVTNVGYSTSSYAVKVEKPKGVSVTVEPRNLRFRRMGEKLSYKVTFVSNGKTGVSGSSSFGSLTWTSDKYAVRSPIAVTWQ 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02160 800 Pfam Peptidase inhibitor I9 61 145 IPR010259 -
Cca01g02160 800 CDD PA_subtilisin_like 384 509 - -
Cca01g02160 800 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 51 800 - -
Cca01g02160 800 Pfam PA domain 407 492 IPR003137 -
Cca01g02160 800 Pfam Subtilase family 170 619 IPR000209 GO:0006508|GO:0008236
Cca01g02160 800 ProSiteProfiles Serine proteases, subtilase domain profile. 148 649 - -
Cca01g02160 800 PRINTS Subtilisin serine protease family (S8) signature 576 592 IPR015500 -
Cca01g02160 800 PRINTS Subtilisin serine protease family (S8) signature 247 260 IPR015500 -
Cca01g02160 800 PRINTS Subtilisin serine protease family (S8) signature 169 188 IPR015500 -
Cca01g02160 800 Gene3D Peptidase S8/S53 domain 171 662 IPR036852 GO:0004252|GO:0006508
Cca01g02160 800 CDD Peptidases_S8_3 145 613 IPR034197 -
Cca01g02160 800 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 174 185 IPR023827 -
Cca01g02160 800 ProSitePatterns Serine proteases, subtilase family, serine active site. 577 587 IPR023828 -
Cca01g02160 800 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 49 146 IPR037045 -
Cca01g02160 800 Pfam Fibronectin type-III domain 696 797 IPR041469 -
Cca01g02160 800 Gene3D - 377 516 - -
Cca01g02160 800 SUPERFAMILY Subtilisin-like 145 653 IPR036852 GO:0004252|GO:0006508
Cca01g02160 800 Gene3D - 666 799 - -
Cca01g02160 800 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 51 800 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02160 Cca-Chr1 49517419 49522766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02160 59 800 Subtilisin-like Serine Gene Family AT1G01900 57.852 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02160 - - gmx:100817581 1370.91