Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02158 ATGGCCTCTTCACCAACCTTACTAGcttttcttcttcttcttcttcttctccgccttcACCGTTCCTCGCCACTCTCACTCTCCGTCGAAGACGTCATAGTTTCGTCGCCCGAGGGAACCTTCACCGCAGGGTTCACCTCCGTTGGGGAAAATGCCTATTGCTTCGCCATATGGTTCTCTTCGCAACCTCCCAAAACCATCGTTTGGATGGCCAATCGCGACCAGCCGGTCAACGGAAAGCGCTCCTCTCTTTCACTTCTTAAGACCGGCGACCTCGTGTTAACCGACGCCGCTCAGTTCAACGTCTGGTCCACCGGCACGCTCTCTCCGAATCCGCTGGAGCTGCATTTGTTCGATACCGCCAACCTCGTGCTCCGGGATCAGAGCAATAGAACCTCTGTTCTGTGGCAGAGCTTTGATTTTCCCACCGATACGCTCCTTCCTGGCCAGATTCTCACTAGGTTCACGAAGCTTGTTTCCTCAAGAAGCGAGGGCAACTATTCCTCTGGTTTTTACAAGCTCTTCTTCGACAATGACAACGTTTTCCGTCTTCTATACGAGGGTCCTCAAGTTTCAAGCGTTTACTGGCCAGATCCTTGGCTGGTTAGCAACAACGTTGGCAGTGGTAACGGTAGATCCACGTACAATAGTAGCAGAGTTGCAGTCTTAGATGAATATGGTCAATTTCGTGCTTCTGATCATTTCAGTTTCAAGACAATTGACTATGGGTTACTCCTCCAACGAAGATTGACCCTTGATCATGATGGCAATGTTCGTGCCTATAGCAGAAAAAATGGCCAAGAAAATTGGTCAATATCAGGGCAATTTAAATCACAACCTTGTTTCATTCACGGGATTTGTGGACCCAACAGTATATGCAGTTATGAACCAGTAAGTGGTAGAAAGTGTGCGTGCCTTGAAGGGTATAGTTGGATTGATAGTCAAGATTGGACTCTAGGTTGCAAACCAAATTTCCAACCAACTTGTGACAACAAGACAGAATATCGCTTCATATCCTATGATGAAGTAGATTTCTATGGTTATGATTATGGTTCATCCTTTGAAAATTTCACCTATAAACAATGTGAGAGTTTGTGTTTGGAATTGTGCGAGTGCATGGGCTTTCAGTACACTTTTGCTGCAGAAAATGGTCATTTTTGGTGTTATCCCAAGACACAATTGCTAAATGGACATCGTTCACCCGGTTTCACGGGTCAAATTTTCTTGCGTTTGCCGAAAACAAGTGCTCAAGAAGTAAACCACATGCAAAACAATGATGGCTTGGTTTGTTCTAGAAATGCTGAGAAGTTACTAGAGAGACCATACGTGAAAGGCAAGGAAAATGGGTCGGTGAAATTCATGCTTTGGTTTGCAGTTGGGTTGGGAGGGTTTGAGGTGGTGTGCATCTTTATGGTGTGGTGTCTCCTGTTTAGGAGTAGCAACCACTTGGTTAGTGCAGACCAACAAGGGTATGTTCTTGCAGCAGCGACGGGGTTCAGAAGATACACTTACTCTGAACTTAAACAAGCCACGAAAGGTTTCAGTGAAGAGATTGGAAGGGGTGCTGGGGGAGTTGTGTACAAGGGTGTGTTATCAGATAACCGTGTTGCAgcaataaagaagctacatgaatttgccgatcaaggagagagtgagtttctcactgaaatgagtatcattgcaaggcttaaccacatgaacttaattggcatgtgggggtattgtgtagaagggaaacacaggatgttggtgtatgagtacatggaaaatggctctttggctaataatctcccttcaaatgcacttgattggaataagaggtacaacattgctgtgggaatggcaaagggtttggcctacttgcatgaagagtgcttggagtggattttgcattgtgacataaagcctcaaaacatacttcttgactctgattaccaacccaaggtggcagattttggcttgtccaagcccttgaataggaacaacctcaacaactcaagcttctccaggataagagggacaaggggttacatggcaccagaatgggttttcaacttgcaaatcacttccaaagttgatgtttatagctatgggattgtggtgttggagatgataagtgggaggagTCCAATGACAGGTGTACAAGTCACGGAGTTAGGAGCAGAGTCTCATAATGAGAGGTTGGCAACATGGGTGAGGGAGAAGAGGAAGAAAGCAGCAGAAGGGGCTTGTTGGGTGGAACAAATTGTTGACCCCACTTTGGGATCAGATTATGACATGAAGCAGATGGAGATATTGGCAACAGTGGCTTTGGAATGTGTTGAGGAAGAGAAAGACGTGAGACCTAGCATGAGTCAAGTCGTTGAGAGGCTCCAAAGTCATGACTCATGA 2391 0.3563 MASSPTLLAFLLLLLLLRLHRSSPLSLSVEDVIVSSPEGTFTAGFTSVGENAYCFAIWFSSQPPKTIVWMANRDQPVNGKRSSLSLLKTGDLVLTDAAQFNVWSTGTLSPNPLELHLFDTANLVLRDQSNRTSVLWQSFDFPTDTLLPGQILTRFTKLVSSRSEGNYSSGFYKLFFDNDNVFRLLYEGPQVSSVYWPDPWLVSNNVGSGNGRSTYNSSRVAVLDEYGQFRASDHFSFKTIDYGLLLQRRLTLDHDGNVRAYSRKNGQENWSISGQFKSQPCFIHGICGPNSICSYEPVSGRKCACLEGYSWIDSQDWTLGCKPNFQPTCDNKTEYRFISYDEVDFYGYDYGSSFENFTYKQCESLCLELCECMGFQYTFAAENGHFWCYPKTQLLNGHRSPGFTGQIFLRLPKTSAQEVNHMQNNDGLVCSRNAEKLLERPYVKGKENGSVKFMLWFAVGLGGFEVVCIFMVWCLLFRSSNHLVSADQQGYVLAAATGFRRYTYSELKQATKGFSEEIGRGAGGVVYKGVLSDNRVAAIKKLHEFADQGESEFLTEMSIIARLNHMNLIGMWGYCVEGKHRMLVYEYMENGSLANNLPSNALDWNKRYNIAVGMAKGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKPLNRNNLNNSSFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGIVVLEMISGRSPMTGVQVTELGAESHNERLATWVREKRKKAAEGACWVEQIVDPTLGSDYDMKQMEILATVALECVEEEKDVRPSMSQVVERLQSHDS 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02158 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 53 198 IPR036426 -
Cca01g02158 796 Gene3D Transferase(Phosphotransferase) domain 1 588 796 - -
Cca01g02158 796 ProSitePatterns Protein kinases ATP-binding region signature. 518 541 IPR017441 GO:0005524
Cca01g02158 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Cca01g02158 796 Pfam S-locus glycoprotein domain 246 309 IPR000858 GO:0048544
Cca01g02158 796 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 7 795 - -
Cca01g02158 796 Pfam Protein kinase domain 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02158 796 Gene3D - 22 141 IPR036426 -
Cca01g02158 796 SUPERFAMILY Protein kinase-like (PK-like) 496 791 IPR011009 -
Cca01g02158 796 SMART serkin_6 512 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02158 796 SMART blect_4 24 142 IPR001480 -
Cca01g02158 796 CDD PAN_AP_plant 325 412 - -
Cca01g02158 796 CDD STKc_IRAK 518 792 - -
Cca01g02158 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 795 - -
Cca01g02158 796 Gene3D Phosphorylase Kinase; domain 1 479 587 - -
Cca01g02158 796 CDD B_lectin 25 142 IPR001480 -
Cca01g02158 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Cca01g02158 796 ProSiteProfiles Bulb-type lectin domain profile. 18 138 IPR001480 -
Cca01g02158 796 Pfam D-mannose binding lectin 66 153 IPR001480 -
Cca01g02158 796 ProSiteProfiles Protein kinase domain profile. 512 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02158 Cca-Chr1 49492201 49496032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02158 502 793 Trihelix Transcription Factor Family AT5G38560 42.761 1.08e-68 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca01g02158 Pkinase 1.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02158 - - gmx:100806357 1418.29