Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02155 ATGGTGAGAGGAAAGACTCAGATGAAGCGTATAGAGAACGCCACAAGCAGGCAAGTAACTTTCTCTAAACGGAGAAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAAGTTGCTCTTATTATCTTCTCTCCAAGAGGGAAGCTTTATGAATTTGCTAACTCTAG 182 0.4286 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02155 60 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 PANTHER MADS-BOX PROTEIN SOC1 1 59 - -
Cca01g02155 60 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 PANTHER MADS BOX PROTEIN 1 59 - -
Cca01g02155 60 SUPERFAMILY SRF-like 3 59 IPR036879 GO:0003677|GO:0046983
Cca01g02155 60 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Cca01g02155 60 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g02155 60 Gene3D - 13 60 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02155 Cca-Chr1 49424780 49425949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02155 1 60 MADS-box Gene Family AT2G45660 95.000 6.09e-38 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g02155 SRF-TF 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02155 - - mesc:110614643 117.472