Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02154 CATGCAGGAGACAATTGAACGATACCGCAGGCATACCAAGAATGACACTCCAACTTCATTCAGAACAGTTGAACAAAATATGCAGCATTTGAAACAAGAAGCAGCAAACATGATGAAGAAAATTGACTTTCTTGAAGCTTCAAAACGGAAATTCTTGGGAGAAGGTTTGGGGTCTTGCTCCATTGAGGAACTGCACCGAATAGAACAACAGTTGCAGAGGAGTATAAGTAATGTTCGAGCAAGAAAGACTCAGGTTTTCATGGAACAAATTGAAGAACTAAAAGAAAAGGAAAAAGCTCTACTGGAGGAAAAGGCCAGGCTCTCTGAGAAGCATGGCACCGATCCACAGCCAACAACAAAGGATCAGACTGAAAATCAACCCCAAAACTATGCAGAAAGTTCTCTAAGTTCAGATGTGGAGACCGAATTGTTTATTGGACTTCCTCATTCAAGAACAAGGGGCGTCATCAGGTCCAGTTGA 481 0.42 MQETIERYRRHTKNDTPTSFRTVEQNMQHLKQEAANMMKKIDFLEASKRKFLGEGLGSCSIEELHRIEQQLQRSISNVRARKTQVFMEQIEELKEKEKALLEEKARLSEKHGTDPQPTTKDQTENQPQNYAESSLSSDVETELFIGLPHSRTRGVIRSS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02154 159 Coils Coil 61 81 - -
Cca01g02154 159 ProSiteProfiles K-box domain profile. 27 117 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca01g02154 159 Pfam K-box region 24 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca01g02154 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR 56 1 152 - -
Cca01g02154 159 Coils Coil 20 47 - -
Cca01g02154 159 MobiDBLite consensus disorder prediction 118 138 - -
Cca01g02154 159 Coils Coil 83 110 - -
Cca01g02154 159 PANTHER MADS BOX PROTEIN 1 152 - -
Cca01g02154 159 MobiDBLite consensus disorder prediction 101 138 - -
Cca01g02154 159 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02154 Cca-Chr1 49390756 49404201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02154 1 98 MADS-box Gene Family AT2G45660 68.367 1.57e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02154 - - gmx:100807963 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01843 07 45104139 45116633 Cca01g02154 01 49390756 49404201 PCT