Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02152 atgggaagagggagggttgagctgaagaggatagagaacaaaatcaaccgccaagttactttctcaaaaagaaggaacggtttgctcaagaaagcctatgagctctcagttctctgcgatgctgaggttgccctcatcattttctcaagccgtggaaagctctatgaattTGGAAATGTTGGCATTACCAAAACTATTGAGCGATACCAACGTTGCTCTTTTACTCCTCAAGATGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACTCAGAGGCATTTACTCGGGGAAGACCTTGGACCATTGAACATAAAGGAGCTGCAGAATCTTGAGAAACAACTTGAAGGGGCTTTAGCACAAACTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCATAAGGGAACGCCAACTTGGAGACATGAACAAGCAACTTAGACTTAAGCTTGAAGCTCAGGGGTTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCCACTTCAGCTGCTGGAAATAGTGGCTTTCCCTTTCAGCCTCCTCAAAACAGCCCTATGGATTACCAGGCAGAACCCTTTTTGCAAATAGGGTATCATCAATATGTTCAAGCTGAGGCATCTAATGTTTCAAAGAGCATGGCTTGTGAAACTAACTTCATGCAAGGATGGATCCTTTGA 732 0.3279 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGITKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQTRQRKTQIMIEQMEELRIRERQLGDMNKQLRLKLEAQGFNLKAMESLWSSTSAAGNSGFPFQPPQNSPMDYQAEPFLQIGYHQYVQAEASNVSKSMACETNFMQGWIL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02152 243 PANTHER MADS BOX PROTEIN 1 229 - -
Cca01g02152 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 229 - -
Cca01g02152 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca01g02152 243 Coils Coil 119 142 - -
Cca01g02152 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca01g02152 243 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca01g02152 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca01g02152 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cca01g02152 243 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Cca01g02152 243 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca01g02152 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g02152 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g02152 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g02152 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Cca01g02152 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02152 Cca-Chr1 49374074 49380649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02152 1 243 MADS-box Gene Family AT2G45650 65.873 9.78e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca01g02152 K-box 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02152 K09264 - gmx:100820061 442.965