Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02141 ATGGGTTGGTGCGCCGTGGGCGGCGCGGTGTTCCTCCTGGCGGTGGTGATCTCGGTGACGGTGTTCATCTACCGGAAGCTGGCGTACAACCGGACGGCGCCGTTCGAGCACAGCCAGCGGCGGTTCTCGTACTCGGTGCTGCGGCGGGCGACGAACTCGTTCTCGGCGGCGACGAAGCTGGGGCACGGGGGGTTCGGGTCGGTGCACAAGGCGACGCTGCCGTCGGGGCAGACGGTGGCGCTGAAGGTGATGGACTCGCCGGGGTCGCTGCAGGGGGAGAGGGAGTTCCACAACGAGTTGAATTTGTGTTCGAATCTGAAGTCTCCGTTCGTGATTTCGCTTCTAGGTTTTTCTTCGGACCGGCGCGGTCGGAAGCTGGTTCTGGTTTACGAGCTTATGCCGAACCGGAGTTTGCAGGACGCGCTTCTGGACCGGCGCTGTCCGGAGTTGATGGATTGGGGGAAGAGGTTCGACGTCGTCGTTTCGGTGGCCATGGGCTTGGAGTATTTGCATCATGTCTGTGAGCCGCCTGTGATCCATGGGGATATCAAGCCCAGTAATGTGTTGCTGGACCGGGACTTTCGGGCCAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGACGGTCgaggatccgggggtgggggtgggggtggggatgggaatgggaatggtggatgagaatgagaatgagaagaagaaggaggaggagTTTGAGAGTGTCAGTGTCGTCGATGTTGACCGCTCACCGGAGAGTTGTCCGGTGAGGGCTGTGGAATATTCCGACGCGTCTCCGGTGGGGGGTGATAAGCTAAGTGTGGTGTCGGATGGGTGTTTTGAGAGTGTTGATAGTGGGAATGTGAGGAAGAAGgggggtggtggtggtggttcggggagggattggtggtggcggcaggagagtgggggcggaggggaatcggggagggTGAAGGATTATGTGATGGAGTGGATCGGGAGTGAGATTAAGAAGGAGAGGCCCAAGAGCGAGTGGGTGGATTCGTGTTCATCTTCTTCTCCCAAGGAGGAGGGTaagagtaagaagaagaagaagcagaggaagaGGTTGGATTGGTGGGCTTCTCTGGATGAGGAGAGGGTTAAGGGGAAGGCGAGTAAGAAGAGTAGTAGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTGTGTAAGAAGAGTAGGAAGAAGAAGAGGGGTATGGAGTGGTGGCAGAGGGAGGAGGATGGGGTGGAGCAGAAGAGGAAGAGGAAGAGTAAGGGGAGTAGAGGGAGTATTGATTGGTGGTTGGATGGTTTGAGTGGTGAGAGTGAGATAAAGAACAATGGGGGGAGGAGGAATAGCCAGGATTGGGTTAGTGGGGATGTGCCAAAGAGTGGTGGGATTAGTAGCACCCCTAGTATGAGGGGGACTGTGTGTTACATTGCTCCTGAGTATGGGGGTGGGGGGCAGTTGTCTGAGAAGTGTGATGTGTATAGTTTTGGAGTTCTGCTTTTGGTTCTGGTGGCCGGGAGGCGGCCGTTGCAGGTCACGGCCTCGCCCATTTCCGAGTTTGAGAGGGCCAATTTGATATCATGGGCCAGGCAGCTTGCTCACAATGGGAGGCTTTTGGATCTTGTGGACACTTCCATTCATTCGTTGGATAAGGAGCAGGCTTTGCTCTGCATCACCATTGCCTTGTTGTGTTTGCAGAGGTGCCCTGGGAAGAGGCCTTCCATGAAGGAGGTTGTGGGGATGCTTAATGGGGAGGCTGAGCCACCGCACTTGCCGTTCGAGTTCTCGCCTTCACCGCCCTCTAATTTCCCGTTCAAGTCGCGGAAGAAGGCTCGgtga 1854 0.5032 MGWCAVGGAVFLLAVVISVTVFIYRKLAYNRTAPFEHSQRRFSYSVLRRATNSFSAATKLGHGGFGSVHKATLPSGQTVALKVMDSPGSLQGEREFHNELNLCSNLKSPFVISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMDWGKRFDVVVSVAMGLEYLHHVCEPPVIHGDIKPSNVLLDRDFRAKIGDFGLARVKTVEDPGVGVGVGMGMGMVDENENEKKKEEEFESVSVVDVDRSPESCPVRAVEYSDASPVGGDKLSVVSDGCFESVDSGNVRKKGGGGGGSGRDWWWRQESGGGGESGRVKDYVMEWIGSEIKKERPKSEWVDSCSSSSPKEEGKSKKKKKQRKRLDWWASLDEERVKGKASKKSSRKPREWWKEEFCEELCKKSRKKKRGMEWWQREEDGVEQKRKRKSKGSRGSIDWWLDGLSGESEIKNNGGRRNSQDWVSGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEAEPPHLPFEFSPSPPSNFPFKSRKKAR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02141 617 SUPERFAMILY Protein kinase-like (PK-like) 36 605 IPR011009 -
Cca01g02141 617 Pfam Protein kinase domain 472 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02141 617 Pfam Protein kinase domain 56 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02141 617 Gene3D Transferase(Phosphotransferase) domain 1 133 241 - -
Cca01g02141 617 Gene3D Transferase(Phosphotransferase) domain 1 455 593 - -
Cca01g02141 617 ProSitePatterns Protein kinases ATP-binding region signature. 60 82 IPR017441 GO:0005524
Cca01g02141 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Cca01g02141 617 PANTHER OS07G0586332 PROTEIN 8 617 IPR044576 -
Cca01g02141 617 MobiDBLite consensus disorder prediction 335 360 - -
Cca01g02141 617 MobiDBLite consensus disorder prediction 409 431 - -
Cca01g02141 617 SMART serkin_6 54 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02141 617 MobiDBLite consensus disorder prediction 595 617 - -
Cca01g02141 617 MobiDBLite consensus disorder prediction 447 471 - -
Cca01g02141 617 ProSiteProfiles Protein kinase domain profile. 54 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02141 617 MobiDBLite consensus disorder prediction 283 315 - -
Cca01g02141 617 PANTHER OS07G0586332 PROTEIN 8 617 - -
Cca01g02141 617 MobiDBLite consensus disorder prediction 409 423 - -
Cca01g02141 617 Gene3D Phosphorylase Kinase; domain 1 18 132 - -
Cca01g02141 617 MobiDBLite consensus disorder prediction 446 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02141 Cca-Chr1 49123967 49126325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02141 465 587 Receptor kinase-like Gene Family AT3G58690 37.209 8.89e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Cca01g02141 Pkinase 6.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02141 - - gmx:100814933 940.258