Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02127 ATGGAAGCCAAGCCTCTTCGGATTGTTCCCTCTTCACACAACACTTCCGGAGGTGGACCCCAGAAGAAGATTGACATGGGACACGCGATGGAAGATGGGGGTGTTGTTCATCAGAGAAAGAGGGTTGTTATGGTCAAAGAGGAGAAAGAGAACTCTTGTTGTTCCACTGTTGGACTTCTCCTCGGGGTTGATGCTCATTCTGCACCACAACCACAAGTGATCACAGAAGCTCAGAGGCGTGAGCTTCACCATCAAGTTTTCATCTTCAACCATTTGGCCTATAAACCTTCTCCTCCTCATCACCTTGTTCAATTCCCGTCCAATATGCCAGAATACAGTTTCCTGGGTTATGATCATGGGAACATGCTGGATCAAGAACCTCATAGGTGTAGGAGAACTGATGGAAAGAAATGGAGGTGTGGTAAGAACGTGGTGCCTGGTCAGAAGTACTGTGAAAGGCACATGCATAGAGGTCGAAACCGTTCAAGAAAGCCTGTGGAAACATCTCAAGCTAACTCTTGTTTGACAACAAAGCCTTCTAACAAGTCACATACCATTAACAAACCAGCCTCAAGGACACAATTCCAAATTTCAAATCCAAAACGTAAGGCCATTCAACCTTATGACACGCCTTCAAGTGCCACACCAAGGAGCCTCCGTGTTGCCAATTGCTCTTCTGCTAATAATAGGTCGAAAAACATTGTACGTTATGCTGAGTACCTCACGCCGATTTCTTCAGCATCTATGGCATGCTCTGGCTCCACTCTTGCCACTGCAGTTGCTCCTAAGGTGGTGGCCACTTTCAGCACAGTGGCAGTGGCGGCCGTTGCTTCAGATAACAAAAGTTGCTTGAAGATATGCCAGAAAGATGACCAATCCAAGAGCTGTATCAGCAACAACATCAGTGTTAGAAGTGGTGGGAAAGGAAGCATTGTTGGTGATACTAATGGCATCTCTACTGGAATAGGCTTCTCCCCAAGGAGTGTTCTTCAAGTTTCAGCTTGCAATCCTTCATACCTCAATGACAGAACCAACATGGAGCCTGCACCCGGTAGGTGCCGGAGAACGGACGGAAAGAAGTGGCAGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAGTACTGTGCCACACACATGCACAGAGGTGCTAAAAAGCGGTTTGCAAACGTTAAACCAGCCGCCACCACCACTTGTTCCGGTGTTACCATTGCACGGTTGCCTCACTCTTCAGCCACAACCAACGTGCAGAAAGCGCATTGTGCAATTCCAAATACAAATCTCTCCATGTCAGTCCCAGCAAGTGCACCATTCAGACAATGTATTGAGAAAAGTCCCAGTAGCAGTGACACTGATACCACCATCAGTGACACCTTGAATGAGTGTAGCTATGCTTCTTTCTAA 1398 0.4714 MEAKPLRIVPSSHNTSGGGPQKKIDMGHAMEDGGVVHQRKRVVMVKEEKENSCCSTVGLLLGVDAHSAPQPQVITEAQRRELHHQVFIFNHLAYKPSPPHHLVQFPSNMPEYSFLGYDHGNMLDQEPHRCRRTDGKKWRCGKNVVPGQKYCERHMHRGRNRSRKPVETSQANSCLTTKPSNKSHTINKPASRTQFQISNPKRKAIQPYDTPSSATPRSLRVANCSSANNRSKNIVRYAEYLTPISSASMACSGSTLATAVAPKVVATFSTVAVAAVASDNKSCLKICQKDDQSKSCISNNISVRSGGKGSIVGDTNGISTGIGFSPRSVLQVSACNPSYLNDRTNMEPAPGRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRFANVKPAATTTCSGVTIARLPHSSATTNVQKAHCAIPNTNLSMSVPASAPFRQCIEKSPSSSDTDTTISDTLNECSYASF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02127 465 MobiDBLite consensus disorder prediction 165 217 - -
Cca01g02127 465 MobiDBLite consensus disorder prediction 152 217 - -
Cca01g02127 465 ProSiteProfiles WRC domain profile. 124 168 IPR014977 -
Cca01g02127 465 PANTHER GROWTH-REGULATING FACTOR 9 337 423 - -
Cca01g02127 465 PANTHER GROWTH-REGULATING FACTOR 9 45 266 - -
Cca01g02127 465 Pfam WRC 126 167 IPR014977 -
Cca01g02127 465 Pfam WRC 348 385 IPR014977 -
Cca01g02127 465 Coils Coil 463 465 - -
Cca01g02127 465 PANTHER - 45 266 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca01g02127 465 PANTHER - 337 423 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca01g02127 465 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g02127 465 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca01g02127 465 ProSiteProfiles WRC domain profile. 347 393 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02127 Cca-Chr1 48802998 48806123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02127 77 385 GRF Transcription Factor Family AT2G45480 33.333 6.52e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02127 - - gmx:100795050 690.263