Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02126 ATGCTACACACTCGACAGTTTTTGAATATTGGTGAGTCTTCACTTTTAGACGGCAACACAGAAGCACGTGCCTCAGCTGAAAACATTGAAAAGAAAATATTAGGAAGAAACGTTGCATGTGATAAGTACAATGGTGAAGGTGAAATCAAAAGCCAAACAACATCGCATGAACCAAAACACACAGAAGATCAAGCATTAGAGGCTACTTGCAGGAGAGCTAAAGTTTCCATAAGAGCACGATCAGAtttttctttgATCGGTGATGGGTGTCAATGGAGAAAATATGGACAGAAGACAGCGAAAGGAAACCCTTGTCCCCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTTCATTGA 378 0.4206 MLHTRQFLNIGESSLLDGNTEARASAENIEKKILGRNVACDKYNGEGEIKSQTTSHEPKHTEDQALEATCRRAKVSIRARSDFSLIGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVH 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02126 125 SMART WRKY_cls 86 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02126 125 SUPERFAMILY WRKY DNA-binding domain 79 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g02126 125 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 124 - -
Cca01g02126 125 ProSiteProfiles WRKY domain profile. 81 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02126 125 Pfam WRKY DNA -binding domain 88 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g02126 125 Gene3D WRKY domain 73 125 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g02126 125 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 124 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02126 Cca-Chr1 48783538 48785603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02126 61 125 WRKY Transcription Factor Family AT1G62300 73.846 3.16e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g02126 WRKY 3.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02126 - - ccaj:114915082 262.307