Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02120 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCACCTTTTCTCGCTAGAGATCTTCACTTACACCCTCACCACCAATTCCAGCCCCACCACAACCACCAAAACACCGACGAGGAAGCCGGCAATGGCCACGGCCAGAAGCGAGATCGCGACGAGAACGCCGGCGGAGGAGGCTCTGCTACGCCCCCACACGGCGGAGAAGGCAAGGAACCCGGGTCAGGAGATGGAGGAGGAAGTGAGATGTCCAGAAGGCCAAGAGGAAGACCCGCAGGCTCCAAAAACAAGCCCAAACCACCTATTATCATCACAAGAGACAGTGCCAACGCTCTCCGATCCCATGTCATGGAAATCGCCAACGGCTGTGACATCATGGAGAGCGTCACCGCCTTCGCGAGGCGGCGACAGCGCGGTGTCTGCGTGCTCAGTGGCAGCGGCACCGTCACCAACGTCACACTCCGGCAGCCGGCTTCGCCGGGTGCCGTGGTGACCCTTCATGGAAGGTTTGAGATTCTGTCCCTGTCCGGATCATTCCTGCCGCCGCCGGCTCCACCAGCGGCGTCAGGACTGGCCATATACTTGGCCGGTGGACAGGGACAGGTGGTAGGTGGAAGTGTGGTGGGACCACTTGTGGCTTCAGGTCCAGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCATATGAGAGACTACCCTTAGAGGAAGAGGAAACCCCGGTGCCTGTTCCTGGCAATGGAGGATTAGGGTCCCCGGGAATTGCGGGGACacaacaacaaccacaatcgcagcctcaacagcaacaacaGCTTGTGGGAGATCCTAATAGTTCTTCTCTTTTCCATGGAATGCCTCAGAATCTTCTCAATTCGGTTCAATTACCGGCTGAGGGTTATTGGGGTGGCAGTGGTCGCCCACCTTTTTAA 924 0.5519 MDPVAAQGRPLPPPFLARDLHLHPHHQFQPHHNHQNTDEEAGNGHGQKRDRDENAGGGGSATPPHGGEGKEPGSGDGGGSEMSRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPVPGNGGLGSPGIAGTQQQPQSQPQQQQQLVGDPNSSSLFHGMPQNLLNSVQLPAEGYWGGSGRPPF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02120 307 CDD DUF296 112 223 IPR005175 -
Cca01g02120 307 MobiDBLite consensus disorder prediction 236 286 - -
Cca01g02120 307 ProSiteProfiles PPC domain profile profile. 108 244 IPR005175 -
Cca01g02120 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 244 - -
Cca01g02120 307 MobiDBLite consensus disorder prediction 19 55 - -
Cca01g02120 307 PIRSF ESCAROLA 17 307 IPR014476 GO:0003680
Cca01g02120 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 307 IPR014476 GO:0003680
Cca01g02120 307 MobiDBLite consensus disorder prediction 1 102 - -
Cca01g02120 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 307 - -
Cca01g02120 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Cca01g02120 307 MobiDBLite consensus disorder prediction 251 286 - -
Cca01g02120 307 Gene3D - 111 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02120 Cca-Chr1 48706384 48708058 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02120 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 65.152 7.71e-92 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02120 - - gmx:100816243 442.965