Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02118 ATGAGTATAAACTCTAGTTGTAGTGGTGGCAACAATAGTAACAATAACAATGGTGGTGGTAACAGTAGTGGTGGTAGCCCTTGTGGAGCCTGCAAGTTTTTGAGGAGAAAGTGCGTGCCTGGTTGCATCTTTGCTCCATACTTTGATTCGGAGCAAGGTGCCACGCATTTTGCGGCGGTGCACAAGGTTTTTGGTGCTAGCAACGTTTCCAAGTTGCTCCTTAACATTCCGGTGCATAAGAGGCTTGACGCGGTGGTCACAATTTGCTATGAAGCACAGGCACGGCTTAGAGACCCTGTGTATGGTTGTGTTGCTCATATCTTCGCACTTCAGCAACAGGTGGTGACTTTGCAAGCAGAACTTTCCTACTTACAAGGGCACCTTGCAACCCTAGAGTTaccccaaccccaaccaccaccaccaccTTCTTCTCCACAAGCAACCATGGCACCTCCGGTGGTCTCAGTAGCTGAACTCCCATCATTAACCACTTATGACCTCTCAACACTTTTTGATCCCATGGCCCAGACTCCTTCATGGGCCCTGCAGCCCAACAGGCCCATAGACTCACGTCAATATATGGGTAGTAGTGGCACATCAACCACTACTAGTGCTAGTGCTAGTGGTGGTGATCTTCAAGCATTGGCTTGTGAGCTTTTGCATAGACATGGATCTTCCCCTCTTGCATGCTCTAATCCCTCTTCCTCTCACAACATTTCCAAATGA 726 0.4628 MSINSSCSGGNNSNNNNGGGNSSGGSPCGACKFLRRKCVPGCIFAPYFDSEQGATHFAAVHKVFGASNVSKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVTLQAELSYLQGHLATLELPQPQPPPPPSSPQATMAPPVVSVAELPSLTTYDLSTLFDPMAQTPSWALQPNRPIDSRQYMGSSGTSTTTSASASGGDLQALACELLHRHGSSPLACSNPSSSHNISK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02118 241 ProSiteProfiles LOB domain profile. 26 128 IPR004883 -
Cca01g02118 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 225 - -
Cca01g02118 241 MobiDBLite consensus disorder prediction 178 208 - -
Cca01g02118 241 MobiDBLite consensus disorder prediction 1 23 - -
Cca01g02118 241 Pfam Lateral organ boundaries (LOB) domain 27 125 IPR004883 -
Cca01g02118 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02118 Cca-Chr1 48626056 48630701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02118 30 241 AS2 family AT2G45420 61.333 3.04e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca01g02118 LOB 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02118 K21994 - gmx:100779541 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01819 07 44757491 44761710 Cca01g02118 01 48626056 48630701 PCT